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A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage.
Faure E, Savy T, Rizzi B, Melani C, Stašová O, Fabrèges D, Špir R, Hammons M, Čúnderlík R, Recher G, Lombardot B, Duloquin L, Colin I, Kollár J, Desnoulez S, Affaticati P, Maury B, Boyreau A, Nief JY, Calvat P, Vernier P, Frain M, Lutfalla G, Kergosien Y, Suret P, Remešíková M, Doursat R, Sarti A, Mikula K, Peyriéras N, Bourgine P. Faure E, et al. Among authors: bourgine p. Nat Commun. 2016 Feb 25;7:8674. doi: 10.1038/ncomms9674. Nat Commun. 2016. PMID: 26912388 Free PMC article.
A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis.
Castro-González C, Luengo-Oroz MA, Duloquin L, Savy T, Rizzi B, Desnoulez S, Doursat R, Kergosien YL, Ledesma-Carbayo MJ, Bourgine P, Peyriéras N, Santos A. Castro-González C, et al. Among authors: bourgine p. PLoS Comput Biol. 2014 Jun 19;10(6):e1003670. doi: 10.1371/journal.pcbi.1003670. eCollection 2014 Jun. PLoS Comput Biol. 2014. PMID: 24945246 Free PMC article.
Combining sea urchin embryo cell lineages by error-tolerant graph matching.
Rubio-Guivernau JL, Luengo-Oroz MA, Duloquin L, Savy T, Peyrieras N, Bourgine P, Santos A. Rubio-Guivernau JL, et al. Among authors: bourgine p. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:5918-21. doi: 10.1109/IEMBS.2009.5334851. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19965057
Methodology for reconstructing early zebrafish development from in vivo multiphoton microscopy.
Luengo-Oroz MA, Rubio-Guivernau JL, Faure E, Savy T, Duloquin L, Olivier N, Pastor D, Ledesma-Carbayo M, Débarre D, Bourgine P, Beaurepaire E, Peyriéras N, Santos A. Luengo-Oroz MA, et al. Among authors: bourgine p. IEEE Trans Image Process. 2012 Apr;21(4):2335-40. doi: 10.1109/TIP.2011.2177911. Epub 2011 Dec 1. IEEE Trans Image Process. 2012. PMID: 22155959 Free article.
Cells tracking in a live zebrafish embryo.
Melani C, Campana M, Lombardot B, Rizzi B, Veronesi F, Zanella C, Bourgine P, Mikula K, Peyriéras N, Sarti A. Melani C, et al. Among authors: bourgine p. Annu Int Conf IEEE Eng Med Biol Soc. 2007;2007:1631-4. doi: 10.1109/IEMBS.2007.4352619. Annu Int Conf IEEE Eng Med Biol Soc. 2007. PMID: 18002285
42 results