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HYSYS: have you swapped your samples?
Schröder J, Corbin V, Papenfuss AT. Schröder J, et al. Among authors: papenfuss at. Bioinformatics. 2017 Feb 15;33(4):596-598. doi: 10.1093/bioinformatics/btw685. Bioinformatics. 2017. PMID: 28003257 Free PMC article.
The collection and analysis of cancer sequencing data in the clinical setting is an elaborate process that may involve consenting patients, obtaining possibly-multiple DNA samples, sequencing and analysis. Many of these steps are manual. At any stage mistakes can occur tha …
The collection and analysis of cancer sequencing data in the clinical setting is an elaborate process that may involve consenting patients, …
Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads.
Schröder J, Hsu A, Boyle SE, Macintyre G, Cmero M, Tothill RW, Johnstone RW, Shackleton M, Papenfuss AT. Schröder J, et al. Among authors: papenfuss at. Bioinformatics. 2014 Apr 15;30(8):1064-1072. doi: 10.1093/bioinformatics/btt767. Epub 2014 Jan 2. Bioinformatics. 2014. PMID: 24389656 Free PMC article.
Socrates has single-nucleotide resolution, identifies micro-homologies and untemplated sequence at break points, has high sensitivity and high specificity and takes advantage of parallelism for efficient use of resources. ...AVAILABILITY AND IMPLEMENTATION: Socrates is rel …
Socrates has single-nucleotide resolution, identifies micro-homologies and untemplated sequence at break points, has high sensitivity …
The architecture and evolution of cancer neochromosomes.
Garsed DW, Marshall OJ, Corbin VD, Hsu A, Di Stefano L, Schröder J, Li J, Feng ZP, Kim BW, Kowarsky M, Lansdell B, Brookwell R, Myklebost O, Meza-Zepeda L, Holloway AJ, Pedeutour F, Choo KH, Damore MA, Deans AJ, Papenfuss AT, Thomas DM. Garsed DW, et al. Among authors: papenfuss at. Cancer Cell. 2014 Nov 10;26(5):653-67. doi: 10.1016/j.ccell.2014.09.010. Epub 2014 Nov 10. Cancer Cell. 2014. PMID: 25517748 Free article.
UV-Associated Mutations Underlie the Etiology of MCV-Negative Merkel Cell Carcinomas.
Wong SQ, Waldeck K, Vergara IA, Schröder J, Madore J, Wilmott JS, Colebatch AJ, De Paoli-Iseppi R, Li J, Lupat R, Semple T, Arnau GM, Fellowes A, Leonard JH, Hruby G, Mann GJ, Thompson JF, Cullinane C, Johnston M, Shackleton M, Sandhu S, Bowtell DD, Johnstone RW, Fox SB, McArthur GA, Papenfuss AT, Scolyer RA, Gill AJ, Hicks RJ, Tothill RW. Wong SQ, et al. Among authors: papenfuss at. Cancer Res. 2015 Dec 15;75(24):5228-34. doi: 10.1158/0008-5472.CAN-15-1877. Epub 2015 Dec 1. Cancer Res. 2015. PMID: 26627015
CD271 Expression on Patient Melanoma Cells Is Unstable and Unlinked to Tumorigenicity.
Boyle SE, Fedele CG, Corbin V, Wybacz E, Szeto P, Lewin J, Young RJ, Wong A, Fuller R, Spillane J, Speakman D, Donahoe S, Pohl M, Gyorki D, Henderson MA, Johnstone RW, Papenfuss AT, Shackleton M. Boyle SE, et al. Among authors: papenfuss at. Cancer Res. 2016 Jul 1;76(13):3965-77. doi: 10.1158/0008-5472.CAN-15-2377. Epub 2016 Jun 20. Cancer Res. 2016. PMID: 27325642
187 results