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Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.
Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C; PANGEA-HIV Consortium. Ratmann O, et al. Among authors: kuhnert d. Mol Biol Evol. 2017 Jan;34(1):185-203. doi: 10.1093/molbev/msw217. Epub 2016 Oct 7. Mol Biol Evol. 2017. PMID: 28053012 Free PMC article.
Phylodynamic analysis of HIV sub-epidemics in Mochudi, Botswana.
Novitsky V, Kühnert D, Moyo S, Widenfelt E, Okui L, Essex M. Novitsky V, et al. Among authors: kuhnert d. Epidemics. 2015 Dec;13:44-55. doi: 10.1016/j.epidem.2015.07.002. Epub 2015 Aug 28. Epidemics. 2015. PMID: 26616041 Free PMC article.
Taming the BEAST-A Community Teaching Material Resource for BEAST 2.
Barido-Sottani J, Bošková V, Plessis LD, Kühnert D, Magnus C, Mitov V, Müller NF, PecErska J, Rasmussen DA, Zhang C, Drummond AJ, Heath TA, Pybus OG, Vaughan TG, Stadler T. Barido-Sottani J, et al. Among authors: kuhnert d. Syst Biol. 2018 Jan 1;67(1):170-174. doi: 10.1093/sysbio/syx060. Syst Biol. 2018. PMID: 28673048 Free PMC article.
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics.
Kühnert D, Kouyos R, Shirreff G, Pečerska J, Scherrer AU, Böni J, Yerly S, Klimkait T, Aubert V, Günthard HF, Stadler T, Bonhoeffer S; Swiss HIV Cohort Study. Kühnert D, et al. PLoS Pathog. 2018 Feb 20;14(2):e1006895. doi: 10.1371/journal.ppat.1006895. eCollection 2018 Feb. PLoS Pathog. 2018. PMID: 29462208 Free PMC article.
Tuberculosis outbreak investigation using phylodynamic analysis.
Kühnert D, Coscolla M, Brites D, Stucki D, Metcalfe J, Fenner L, Gagneux S, Stadler T. Kühnert D, et al. Epidemics. 2018 Dec;25:47-53. doi: 10.1016/j.epidem.2018.05.004. Epub 2018 May 22. Epidemics. 2018. PMID: 29880306 Free PMC article.
60 results