Shi J - Search Results

1

Computational design of an epitope-specific Keap1 binding antibody using hotspot residues grafting and CDR loop swapping.

Liu X, Taylor RD, Griffin L, Coker SF, Adams R, Ceska T, Shi J, Lawson AD, Baker T. Liu X, et al. Among authors: shi j. Sci Rep. 2017 Jan 27;7:41306. doi: 10.1038/srep41306. Sci Rep. 2017. PMID: 28128368 Free PMC article.

2

Improving B-cell epitope prediction and its application to global antibody-antigen docking.

Krawczyk K, Liu X, Baker T, Shi J, Deane CM. Krawczyk K, et al. Among authors: shi j. Bioinformatics. 2014 Aug 15;30(16):2288-94. doi: 10.1093/bioinformatics/btu190. Epub 2014 Apr 21. Bioinformatics. 2014. PMID: 24753488 Free PMC article.

3

Computational Exploration of Conformational Transitions in Protein Drug Targets.

Cossins BP, Lawson ADG, Shi J. Cossins BP, et al. Among authors: shi j. Methods Mol Biol. 2018;1762:339-365. doi: 10.1007/978-1-4939-7756-7_17. Methods Mol Biol. 2018. PMID: 29594780

4

The Chemical Synthesis of Knob Domain Antibody Fragments.

Macpherson A, Birtley JR, Broadbridge RJ, Brady K, Schulze MED, Tang Y, Joyce C, Saunders K, Bogle G, Horton J, Kelm S, Taylor RD, Franklin RJ, Selby MD, Laabei M, Wonfor T, Hold A, Stanley P, Vadysirisack D, Shi J, van den Elsen J, Lawson ADG. Macpherson A, et al. Among authors: shi j. ACS Chem Biol. 2021 Sep 17;16(9):1757-1769. doi: 10.1021/acschembio.1c00472. Epub 2021 Aug 18. ACS Chem Biol. 2021. PMID: 34406751 Free article.

5

SAbDab: the structural antibody database.

Dunbar J, Krawczyk K, Leem J, Baker T, Fuchs A, Georges G, Shi J, Deane CM. Dunbar J, et al. Among authors: shi j. Nucleic Acids Res. 2014 Jan;42(Database issue):D1140-6. doi: 10.1093/nar/gkt1043. Epub 2013 Nov 8. Nucleic Acids Res. 2014. PMID: 24214988 Free PMC article.

6

Length-independent structural similarities enrich the antibody CDR canonical class model.

Nowak J, Baker T, Georges G, Kelm S, Klostermann S, Shi J, Sridharan S, Deane CM. Nowak J, et al. Among authors: shi j. MAbs. 2016 May-Jun;8(4):751-60. doi: 10.1080/19420862.2016.1158370. MAbs. 2016. PMID: 26963563 Free PMC article.

7

B-cell epitopes: Discontinuity and conformational analysis.

Ferdous S, Kelm S, Baker TS, Shi J, Martin ACR. Ferdous S, et al. Among authors: shi j. Mol Immunol. 2019 Oct;114:643-650. doi: 10.1016/j.molimm.2019.09.014. Epub 2019 Sep 20. Mol Immunol. 2019. PMID: 31546099

8

Antibody i-Patch prediction of the antibody binding site improves rigid local antibody-antigen docking.

Krawczyk K, Baker T, Shi J, Deane CM. Krawczyk K, et al. Among authors: shi j. Protein Eng Des Sel. 2013 Oct;26(10):621-9. doi: 10.1093/protein/gzt043. Epub 2013 Sep 4. Protein Eng Des Sel. 2013. PMID: 24006373

9

Modulating Target Protein Biology Through the Re-mapping of Conformational Distributions Using Small Molecules.

Lawson ADG, MacCoss M, Baeten DL, Macpherson A, Shi J, Henry AJ. Lawson ADG, et al. Among authors: shi j. Front Chem. 2021 May 4;9:668186. doi: 10.3389/fchem.2021.668186. eCollection 2021. Front Chem. 2021. PMID: 34017820 Free PMC article.

10

Membrane Interactions of α-Synuclein Revealed by Multiscale Molecular Dynamics Simulations, Markov State Models, and NMR.

Amos STA, Schwarz TC, Shi J, Cossins BP, Baker TS, Taylor RJ, Konrat R, Sansom MSP. Amos STA, et al. Among authors: shi j. J Phys Chem B. 2021 Mar 25;125(11):2929-2941. doi: 10.1021/acs.jpcb.1c01281. Epub 2021 Mar 15. J Phys Chem B. 2021. PMID: 33719460 Free PMC article.

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