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Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.
Rauch A, Bellew M, Eng J, Fitzgibbon M, Holzman T, Hussey P, Igra M, Maclean B, Lin CW, Detter A, Fang R, Faca V, Gafken P, Zhang H, Whiteaker J, States D, Hanash S, Paulovich A, McIntosh MW. Rauch A, et al. J Proteome Res. 2006 Jan;5(1):112-21. doi: 10.1021/pr0503533. J Proteome Res. 2006. PMID: 16396501
Head-to-head comparison of serum fractionation techniques.
Whiteaker JR, Zhang H, Eng JK, Fang R, Piening BD, Feng LC, Lorentzen TD, Schoenherr RM, Keane JF, Holzman T, Fitzgibbon M, Lin C, Zhang H, Cooke K, Liu T, Camp DG 2nd, Anderson L, Watts J, Smith RD, McIntosh MW, Paulovich AG. Whiteaker JR, et al. Among authors: eng jk. J Proteome Res. 2007 Feb;6(2):828-36. doi: 10.1021/pr0604920. J Proteome Res. 2007. PMID: 17269739
Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer.
Whiteaker JR, Zhang H, Zhao L, Wang P, Kelly-Spratt KS, Ivey RG, Piening BD, Feng LC, Kasarda E, Gurley KE, Eng JK, Chodosh LA, Kemp CJ, McIntosh MW, Paulovich AG. Whiteaker JR, et al. Among authors: eng jk. J Proteome Res. 2007 Oct;6(10):3962-75. doi: 10.1021/pr070202v. Epub 2007 Aug 21. J Proteome Res. 2007. PMID: 17711321
The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools.
Klimek J, Eddes JS, Hohmann L, Jackson J, Peterson A, Letarte S, Gafken PR, Katz JE, Mallick P, Lee H, Schmidt A, Ossola R, Eng JK, Aebersold R, Martin DB. Klimek J, et al. Among authors: eng jk. J Proteome Res. 2008 Jan;7(1):96-103. doi: 10.1021/pr070244j. Epub 2007 Aug 21. J Proteome Res. 2008. PMID: 17711323 Free PMC article.
A fast SEQUEST cross correlation algorithm.
Eng JK, Fischer B, Grossmann J, Maccoss MJ. Eng JK, et al. J Proteome Res. 2008 Oct;7(10):4598-602. doi: 10.1021/pr800420s. Epub 2008 Sep 6. J Proteome Res. 2008. PMID: 18774840
Proteomic analyses using Grifola frondosa metalloendoprotease Lys-N.
Hohmann L, Sherwood C, Eastham A, Peterson A, Eng JK, Eddes JS, Shteynberg D, Martin DB. Hohmann L, et al. Among authors: eng jk. J Proteome Res. 2009 Mar;8(3):1415-22. doi: 10.1021/pr800774h. J Proteome Res. 2009. PMID: 19195997 Free PMC article.
140 results