Brown JM - Search Results

1

Short Communication: Lack of Support for Socially Connected HIV-1 Transmission Among Young Adult Black Men Who Have Sex with Men.

Fujimoto K, Coghill LM, Weier CA, Hwang LY, Kim JY, Schneider JA, Metzker ML, Brown JM. Fujimoto K, et al. Among authors: brown jm. AIDS Res Hum Retroviruses. 2017 Sep;33(9):935-940. doi: 10.1089/AID.2016.0228. Epub 2017 Apr 18. AIDS Res Hum Retroviruses. 2017. PMID: 28398775 Free PMC article.

2

Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences.

Scaduto DI, Brown JM, Haaland WC, Zwickl DJ, Hillis DM, Metzker ML. Scaduto DI, et al. Among authors: brown jm. Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21242-7. doi: 10.1073/pnas.1015673107. Epub 2010 Nov 15. Proc Natl Acad Sci U S A. 2010. PMID: 21078965 Free PMC article.

3

Untangling the influences of unmodeled evolutionary processes on phylogenetic signal in a forensically important HIV-1 transmission cluster.

Doyle VP, Andersen JJ, Nelson BJ, Metzker ML, Brown JM. Doyle VP, et al. Among authors: brown jm. Mol Phylogenet Evol. 2014 Jun;75:126-37. doi: 10.1016/j.ympev.2014.02.022. Epub 2014 Feb 28. Mol Phylogenet Evol. 2014. PMID: 24589520

4

Human adipose tissue as a reservoir for memory CD4+ T cells and HIV.

Couturier J, Suliburk JW, Brown JM, Luke DJ, Agarwal N, Yu X, Nguyen C, Iyer D, Kozinetz CA, Overbeek PA, Metzker ML, Balasubramanyam A, Lewis DE. Couturier J, et al. Among authors: brown jm. AIDS. 2015 Mar 27;29(6):667-74. doi: 10.1097/QAD.0000000000000599. AIDS. 2015. PMID: 25849830 Free PMC article.

5

P3: Phylogenetic Posterior Prediction in RevBayes.

Höhna S, Coghill LM, Mount GG, Thomson RC, Brown JM. Höhna S, et al. Among authors: brown jm. Mol Biol Evol. 2018 Apr 1;35(4):1028-1034. doi: 10.1093/molbev/msx286. Mol Biol Evol. 2018. PMID: 29136211

6

Identification and Visualization of Functionally Important Domains and Residues in Herpes Simplex Virus Glycoprotein K(gK) Using a Combination of Phylogenetics and Protein Modeling.

Rider PJF, Coghill LM, Naderi M, Brown JM, Brylinski M, Kousoulas KG. Rider PJF, et al. Among authors: brown jm. Sci Rep. 2019 Oct 10;9(1):14625. doi: 10.1038/s41598-019-50490-9. Sci Rep. 2019. PMID: 31601827 Free PMC article.

7

Hinge Region in DNA Packaging Terminase pUL15 of Herpes Simplex Virus: A Potential Allosteric Target for Antiviral Drugs.

Thaljeh LF, Rothschild JA, Naderi M, Coghill LM, Brown JM, Brylinski M. Thaljeh LF, et al. Among authors: brown jm. Biomolecules. 2019 Oct 12;9(10):603. doi: 10.3390/biom9100603. Biomolecules. 2019. PMID: 31614784 Free PMC article.

8

The Expected Behaviors of Posterior Predictive Tests and Their Unexpected Interpretation.

Fabreti LG, Coghill LM, Thomson RC, Höhna S, Brown JM. Fabreti LG, et al. Among authors: brown jm. Mol Biol Evol. 2024 Mar 1;41(3):msae051. doi: 10.1093/molbev/msae051. Mol Biol Evol. 2024. PMID: 38437512 Free PMC article.

9

On the Need for New Measures of Phylogenomic Support.

Thomson RC, Brown JM. Thomson RC, et al. Among authors: brown jm. Syst Biol. 2022 Jun 16;71(4):917-920. doi: 10.1093/sysbio/syac002. Syst Biol. 2022. PMID: 35088868 Free PMC article.

10

Comparing Likelihood Ratios to Understand Genome-Wide Variation in Phylogenetic Support.

Mount GG, Brown JM. Mount GG, et al. Among authors: brown jm. Syst Biol. 2022 Jun 16;71(4):973-985. doi: 10.1093/sysbio/syac014. Syst Biol. 2022. PMID: 35323986

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