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GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome.
Simovski B, Vodák D, Gundersen S, Domanska D, Azab A, Holden L, Holden M, Grytten I, Rand K, Drabløs F, Johansen M, Mora A, Lund-Andersen C, Fromm B, Eskeland R, Gabrielsen OS, Ferkingstad E, Nakken S, Bengtsen M, Nederbragt AJ, Thorarensen HS, Akse JA, Glad I, Hovig E, Sandve GK. Simovski B, et al. Among authors: nederbragt aj. Gigascience. 2017 Jul 1;6(7):1-12. doi: 10.1093/gigascience/gix032. Gigascience. 2017. PMID: 28459977 Free PMC article.
Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes.
Grytten I, Rand KD, Nederbragt AJ, Storvik GO, Glad IK, Sandve GK. Grytten I, et al. Among authors: nederbragt aj. PLoS Comput Biol. 2019 Feb 19;15(2):e1006731. doi: 10.1371/journal.pcbi.1006731. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30779737 Free PMC article.
Coordinates and intervals in graph-based reference genomes.
Rand KD, Grytten I, Nederbragt AJ, Storvik GO, Glad IK, Sandve GK. Rand KD, et al. Among authors: nederbragt aj. BMC Bioinformatics. 2017 May 18;18(1):263. doi: 10.1186/s12859-017-1678-9. BMC Bioinformatics. 2017. PMID: 28521770 Free PMC article.
Genome evolution of a tertiary dinoflagellate plastid.
Gabrielsen TM, Minge MA, Espelund M, Tooming-Klunderud A, Patil V, Nederbragt AJ, Otis C, Turmel M, Shalchian-Tabrizi K, Lemieux C, Jakobsen KS. Gabrielsen TM, et al. Among authors: nederbragt aj. PLoS One. 2011 Apr 26;6(4):e19132. doi: 10.1371/journal.pone.0019132. PLoS One. 2011. PMID: 21541332 Free PMC article.
The Atlantic salmon genome provides insights into rediploidization.
Lien S, Koop BF, Sandve SR, Miller JR, Kent MP, Nome T, Hvidsten TR, Leong JS, Minkley DR, Zimin A, Grammes F, Grove H, Gjuvsland A, Walenz B, Hermansen RA, von Schalburg K, Rondeau EB, Di Genova A, Samy JK, Olav Vik J, Vigeland MD, Caler L, Grimholt U, Jentoft S, Våge DI, de Jong P, Moen T, Baranski M, Palti Y, Smith DR, Yorke JA, Nederbragt AJ, Tooming-Klunderud A, Jakobsen KS, Jiang X, Fan D, Hu Y, Liberles DA, Vidal R, Iturra P, Jones SJ, Jonassen I, Maass A, Omholt SW, Davidson WS. Lien S, et al. Among authors: nederbragt aj. Nature. 2016 May 12;533(7602):200-5. doi: 10.1038/nature17164. Epub 2016 Apr 18. Nature. 2016. PMID: 27088604 Free PMC article.
The genomic mosaicism of hybrid speciation.
Elgvin TO, Trier CN, Tørresen OK, Hagen IJ, Lien S, Nederbragt AJ, Ravinet M, Jensen H, Sætre GP. Elgvin TO, et al. Among authors: nederbragt aj. Sci Adv. 2017 Jun 14;3(6):e1602996. doi: 10.1126/sciadv.1602996. eCollection 2017 Jun. Sci Adv. 2017. PMID: 28630911 Free PMC article.
53 results