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Normalization and noise reduction for single cell RNA-seq experiments.
Ding B, Zheng L, Zhu Y, Li N, Jia H, Ai R, Wildberg A, Wang W. Ding B, et al. Among authors: zheng l. Bioinformatics. 2015 Jul 1;31(13):2225-7. doi: 10.1093/bioinformatics/btv122. Epub 2015 Feb 24. Bioinformatics. 2015. PMID: 25717193 Free PMC article.
Assessing characteristics of RNA amplification methods for single cell RNA sequencing.
Dueck HR, Ai R, Camarena A, Ding B, Dominguez R, Evgrafov OV, Fan JB, Fisher SA, Herstein JS, Kim TK, Kim JM, Lin MY, Liu R, Mack WJ, McGroty S, Nguyen JD, Salathia N, Shallcross J, Souaiaia T, Spaethling JM, Walker CP, Wang J, Wang K, Wang W, Wildberg A, Zheng L, Chow RH, Eberwine J, Knowles JA, Zhang K, Kim J. Dueck HR, et al. Among authors: zheng l. BMC Genomics. 2016 Nov 24;17(1):966. doi: 10.1186/s12864-016-3300-3. BMC Genomics. 2016. PMID: 27881084 Free PMC article.
Constructing 3D interaction maps from 1D epigenomes.
Zhu Y, Chen Z, Zhang K, Wang M, Medovoy D, Whitaker JW, Ding B, Li N, Zheng L, Wang W. Zhu Y, et al. Among authors: zheng l. Nat Commun. 2016 Mar 10;7:10812. doi: 10.1038/ncomms10812. Nat Commun. 2016. PMID: 26960733 Free PMC article.
Identification of DNA motifs that regulate DNA methylation.
Wang M, Zhang K, Ngo V, Liu C, Fan S, Whitaker JW, Chen Y, Ai R, Chen Z, Wang J, Zheng L, Wang W. Wang M, et al. Among authors: zheng l. Nucleic Acids Res. 2019 Jul 26;47(13):6753-6768. doi: 10.1093/nar/gkz483. Nucleic Acids Res. 2019. PMID: 31334813 Free PMC article.
Systems-biology analysis of rheumatoid arthritis fibroblast-like synoviocytes implicates cell line-specific transcription factor function.
Ainsworth RI, Hammaker D, Nygaard G, Ansalone C, Machado C, Zhang K, Zheng L, Carrillo L, Wildberg A, Kuhs A, Svensson MND, Boyle DL, Firestein GS, Wang W. Ainsworth RI, et al. Among authors: zheng l. Nat Commun. 2022 Oct 20;13(1):6221. doi: 10.1038/s41467-022-33785-w. Nat Commun. 2022. PMID: 36266270 Free PMC article.
Parallel characterization of cis-regulatory elements for multiple genes using CRISPRpath.
Ren X, Wang M, Li B, Jamieson K, Zheng L, Jones IR, Li B, Takagi MA, Lee J, Maliskova L, Tam TW, Yu M, Hu R, Lee L, Abnousi A, Li G, Li Y, Hu M, Ren B, Wang W, Shen Y. Ren X, et al. Among authors: zheng l. Sci Adv. 2021 Sep 17;7(38):eabi4360. doi: 10.1126/sciadv.abi4360. Epub 2021 Sep 15. Sci Adv. 2021. PMID: 34524848 Free PMC article.
15,391 results
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