Tamo G - Search Results

1

CorNet: Assigning function to networks of co-evolving residues by automated literature mining.

van den Bergh T, Tamo G, Nobili A, Tao Y, Tan T, Bornscheuer UT, Kuipers RKP, Vroling B, de Jong RM, Subramanian K, Schaap PJ, Desmet T, Nidetzky B, Vriend G, Joosten HJ. van den Bergh T, et al. Among authors: tamo g. PLoS One. 2017 May 18;12(5):e0176427. doi: 10.1371/journal.pone.0176427. eCollection 2017. PLoS One. 2017. PMID: 28545124 Free PMC article.

2

A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments.

Abriata LA, Tamò GE, Dal Peraro M. Abriata LA, et al. Among authors: tamo ge. Proteins. 2019 Dec;87(12):1100-1112. doi: 10.1002/prot.25787. Epub 2019 Aug 7. Proteins. 2019. PMID: 31344267

3

Definition and classification of evaluation units for tertiary structure prediction in CASP12 facilitated through semi-automated metrics.

Abriata LA, Kinch LN, Tamò GE, Monastyrskyy B, Kryshtafovych A, Dal Peraro M. Abriata LA, et al. Among authors: tamo ge. Proteins. 2018 Mar;86 Suppl 1:16-26. doi: 10.1002/prot.25403. Epub 2017 Oct 24. Proteins. 2018. PMID: 29044714

4

Assessment of hard target modeling in CASP12 reveals an emerging role of alignment-based contact prediction methods.

Abriata LA, Tamò GE, Monastyrskyy B, Kryshtafovych A, Dal Peraro M. Abriata LA, et al. Among authors: tamo ge. Proteins. 2018 Mar;86 Suppl 1:97-112. doi: 10.1002/prot.25423. Epub 2017 Nov 29. Proteins. 2018. PMID: 29139163

5

Disentangling constraints using viability evolution principles in integrative modeling of macromolecular assemblies.

Tamò G, Maesani A, Träger S, Degiacomi MT, Floreano D, Dal Peraro M. Tamò G, et al. Sci Rep. 2017 Mar 22;7(1):235. doi: 10.1038/s41598-017-00266-w. Sci Rep. 2017. PMID: 28331186 Free PMC article.

6

Assessment of data-assisted prediction by inclusion of crosslinking/mass-spectrometry and small angle X-ray scattering data in the 12^th Critical Assessment of protein Structure Prediction experiment.

Tamò GE, Abriata LA, Fonti G, Dal Peraro M. Tamò GE, et al. Proteins. 2018 Mar;86 Suppl 1:215-227. doi: 10.1002/prot.25442. Epub 2017 Dec 26. Proteins. 2018. PMID: 29235142

7

The importance of dynamics in integrative modeling of supramolecular assemblies.

Tamò GE, Abriata LA, Dal Peraro M. Tamò GE, et al. Curr Opin Struct Biol. 2015 Apr;31:28-34. doi: 10.1016/j.sbi.2015.02.018. Epub 2015 Mar 18. Curr Opin Struct Biol. 2015. PMID: 25795087 Review.

8

LipidBuilder: A Framework To Build Realistic Models for Biological Membranes.

Bovigny C, Tamò G, Lemmin T, Maïno N, Dal Peraro M. Bovigny C, et al. Among authors: tamo g. J Chem Inf Model. 2015 Dec 28;55(12):2491-9. doi: 10.1021/acs.jcim.5b00501. Epub 2015 Dec 10. J Chem Inf Model. 2015. PMID: 26606666

9

CLoNe: automated clustering based on local density neighborhoods for application to biomolecular structural ensembles.

Träger S, Tamò G, Aydin D, Fonti G, Audagnotto M, Dal Peraro M. Träger S, et al. Among authors: tamo g. Bioinformatics. 2021 May 17;37(7):921-928. doi: 10.1093/bioinformatics/btaa742. Bioinformatics. 2021. PMID: 32821900 Free PMC article.

10

The Polyglutamine Expansion at the N-Terminal of Huntingtin Protein Modulates the Dynamic Configuration and Phosphorylation of the C-Terminal HEAT Domain.

Jung T, Shin B, Tamo G, Kim H, Vijayvargia R, Leitner A, Marcaida MJ, Astorga-Wells J, Jung R, Aebersold R, Peraro MD, Hebert H, Seong IS, Song JJ. Jung T, et al. Among authors: tamo g. Structure. 2020 Sep 1;28(9):1035-1050.e8. doi: 10.1016/j.str.2020.06.008. Epub 2020 Jul 14. Structure. 2020. PMID: 32668197 Free PMC article.

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