Nousiainen K - Search Results

1

Genome-wide Analysis of STAT3-Mediated Transcription during Early Human Th17 Cell Differentiation.

Tripathi SK, Chen Z, Larjo A, Kanduri K, Nousiainen K, Äijo T, Ricaño-Ponce I, Hrdlickova B, Tuomela S, Laajala E, Salo V, Kumar V, Wijmenga C, Lähdesmäki H, Lahesmaa R. Tripathi SK, et al. Among authors: nousiainen k. Cell Rep. 2017 May 30;19(9):1888-1901. doi: 10.1016/j.celrep.2017.05.013. Cell Rep. 2017. PMID: 28564606 Free article.

2

snpEnrichR: analyzing co-localization of SNPs and their proxies in genomic regions.

Nousiainen K, Kanduri K, Ricaño-Ponce I, Wijmenga C, Lahesmaa R, Kumar V, Lähdesmäki H. Nousiainen K, et al. Bioinformatics. 2018 Dec 1;34(23):4112-4114. doi: 10.1093/bioinformatics/bty460. Bioinformatics. 2018. PMID: 29878048 Free PMC article.

3

Data-driven mechanistic analysis method to reveal dynamically evolving regulatory networks.

Intosalmi J, Nousiainen K, Ahlfors H, Lähdesmäki H. Intosalmi J, et al. Among authors: nousiainen k. Bioinformatics. 2016 Jun 15;32(12):i288-i296. doi: 10.1093/bioinformatics/btw274. Bioinformatics. 2016. PMID: 27307629 Free PMC article.

4

Quantitative proteomic characterization and comparison of T helper 17 and induced regulatory T cells.

Mohammad I, Nousiainen K, Bhosale SD, Starskaia I, Moulder R, Rokka A, Cheng F, Mohanasundaram P, Eriksson JE, Goodlett DR, Lähdesmäki H, Chen Z. Mohammad I, et al. Among authors: nousiainen k. PLoS Biol. 2018 May 31;16(5):e2004194. doi: 10.1371/journal.pbio.2004194. eCollection 2018 May. PLoS Biol. 2018. PMID: 29851958 Free PMC article.

5

Analysis of BMP4 and BMP7 signaling in breast cancer cells unveils time-dependent transcription patterns and highlights a common synexpression group of genes.

Rodriguez-Martinez A, Alarmo EL, Saarinen L, Ketolainen J, Nousiainen K, Hautaniemi S, Kallioniemi A. Rodriguez-Martinez A, et al. Among authors: nousiainen k. BMC Med Genomics. 2011 Nov 25;4:80. doi: 10.1186/1755-8794-4-80. BMC Med Genomics. 2011. PMID: 22118688 Free PMC article.

6

Mutations in the circadian gene CLOCK in colorectal cancer.

Alhopuro P, Björklund M, Sammalkorpi H, Turunen M, Tuupanen S, Biström M, Niittymäki I, Lehtonen HJ, Kivioja T, Launonen V, Saharinen J, Nousiainen K, Hautaniemi S, Nuorva K, Mecklin JP, Järvinen H, Orntoft T, Arango D, Lehtonen R, Karhu A, Taipale J, Aaltonen LA. Alhopuro P, et al. Among authors: nousiainen k. Mol Cancer Res. 2010 Jul;8(7):952-60. doi: 10.1158/1541-7786.MCR-10-0086. Epub 2010 Jun 15. Mol Cancer Res. 2010. PMID: 20551151

7

Aneuploidy-associated gene expression signatures characterize malignant transformation in ulcerative colitis.

Gerling M, Nousiainen K, Hautaniemi S, Krüger S, Fritzsche B, Homann N, Bruch HP, Auer G, Roblick UJ, Ried T, Habermann JK. Gerling M, et al. Among authors: nousiainen k. Inflamm Bowel Dis. 2013 Mar-Apr;19(4):691-703. doi: 10.1097/MIB.0b013e31827eeaa4. Inflamm Bowel Dis. 2013. PMID: 23455720 Free PMC article.

8

Allelic imbalance at rs6983267 suggests selection of the risk allele in somatic colorectal tumor evolution.

Tuupanen S, Niittymäki I, Nousiainen K, Vanharanta S, Mecklin JP, Nuorva K, Järvinen H, Hautaniemi S, Karhu A, Aaltonen LA. Tuupanen S, et al. Among authors: nousiainen k. Cancer Res. 2008 Jan 1;68(1):14-7. doi: 10.1158/0008-5472.CAN-07-5766. Cancer Res. 2008. PMID: 18172290

9

High frequency of TTK mutations in microsatellite-unstable colorectal cancer and evaluation of their effect on spindle assembly checkpoint.

Niittymäki I, Gylfe A, Laine L, Laakso M, Lehtonen HJ, Kondelin J, Tolvanen J, Nousiainen K, Pouwels J, Järvinen H, Nuorva K, Mecklin JP, Mäkinen M, Ristimäki A, Ørntoft TF, Hautaniemi S, Karhu A, Kallio MJ, Aaltonen LA. Niittymäki I, et al. Among authors: nousiainen k. Carcinogenesis. 2011 Mar;32(3):305-11. doi: 10.1093/carcin/bgq272. Epub 2010 Dec 16. Carcinogenesis. 2011. PMID: 21163887

10

Candidate driver genes in microsatellite-unstable colorectal cancer.

Alhopuro P, Sammalkorpi H, Niittymäki I, Biström M, Raitila A, Saharinen J, Nousiainen K, Lehtonen HJ, Heliövaara E, Puhakka J, Tuupanen S, Sousa S, Seruca R, Ferreira AM, Hofstra RM, Mecklin JP, Järvinen H, Ristimäki A, Orntoft TF, Hautaniemi S, Arango D, Karhu A, Aaltonen LA. Alhopuro P, et al. Among authors: nousiainen k. Int J Cancer. 2012 Apr 1;130(7):1558-66. doi: 10.1002/ijc.26167. Epub 2011 Aug 3. Int J Cancer. 2012. PMID: 21544814 Free article.

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