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Kronos: a workflow assembler for genome analytics and informatics.
Gigascience. 2017 Jul 1;6(7):1-10. doi: 10.1093/gigascience/gix042.
Gigascience. 2017.
PMID: 28655203
Free PMC article.
Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing.
Laks E, McPherson A, Zahn H, Lai D, Steif A, Brimhall J, Biele J, Wang B, Masud T, Ting J, Grewal D, Nielsen C, Leung S, Bojilova V, Smith M, Golovko O, Poon S, Eirew P, Kabeer F, Ruiz de Algara T, Lee SR, Taghiyar MJ, Huebner C, Ngo J, Chan T, Vatrt-Watts S, Walters P, Abrar N, Chan S, Wiens M, Martin L, Scott RW, Underhill TM, Chavez E, Steidl C, Da Costa D, Ma Y, Coope RJN, Corbett R, Pleasance S, Moore R, Mungall AJ, Mar C, Cafferty F, Gelmon K, Chia S; CRUK IMAXT Grand Challenge Team; Marra MA, Hansen C, Shah SP, Aparicio S.
Laks E, et al. Among authors: taghiyar mj.
Cell. 2019 Nov 14;179(5):1207-1221.e22. doi: 10.1016/j.cell.2019.10.026.
Cell. 2019.
PMID: 31730858
Free PMC article.
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flowCL: ontology-based cell population labelling in flow cytometry.
Courtot M, Meskas J, Diehl AD, Droumeva R, Gottardo R, Jalali A, Taghiyar MJ, Maecker HT, McCoy JP, Ruttenberg A, Scheuermann RH, Brinkman RR.
Courtot M, et al. Among authors: taghiyar mj.
Bioinformatics. 2015 Apr 15;31(8):1337-9. doi: 10.1093/bioinformatics/btu807. Epub 2014 Dec 6.
Bioinformatics. 2015.
PMID: 25481008
Free PMC article.
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flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification.
Malek M, Taghiyar MJ, Chong L, Finak G, Gottardo R, Brinkman RR.
Malek M, et al. Among authors: taghiyar mj.
Bioinformatics. 2015 Feb 15;31(4):606-7. doi: 10.1093/bioinformatics/btu677. Epub 2014 Oct 16.
Bioinformatics. 2015.
PMID: 25378466
Free PMC article.
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