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Network reconstruction and validation of the Snf1/AMPK pathway in baker's yeast based on a comprehensive literature review.
NPJ Syst Biol Appl. 2015 Oct 22;1:15007. doi: 10.1038/npjsba.2015.7. eCollection 2015.
NPJ Syst Biol Appl. 2015.
PMID: 28725459
Free PMC article.
Glucose de-repression by yeast AMP-activated protein kinase SNF1 is controlled via at least two independent steps.
García-Salcedo R, Lubitz T, Beltran G, Elbing K, Tian Y, Frey S, Wolkenhauer O, Krantz M, Klipp E, Hohmann S.
García-Salcedo R, et al. Among authors: lubitz t.
FEBS J. 2014 Apr;281(7):1901-17. doi: 10.1111/febs.12753. Epub 2014 Mar 4.
FEBS J. 2014.
PMID: 24529170
Free article.
Item in Clipboard
New types of experimental data shape the use of enzyme kinetics for dynamic network modeling.
Tummler K, Lubitz T, Schelker M, Klipp E.
Tummler K, et al. Among authors: lubitz t.
FEBS J. 2014 Jan;281(2):549-71. doi: 10.1111/febs.12525. Epub 2013 Nov 4.
FEBS J. 2014.
PMID: 24034816
Free article.
Review.
Item in Clipboard
Annotation and merging of SBML models with semanticSBML.
Krause F, Uhlendorf J, Lubitz T, Schulz M, Klipp E, Liebermeister W.
Krause F, et al. Among authors: lubitz t.
Bioinformatics. 2010 Feb 1;26(3):421-2. doi: 10.1093/bioinformatics/btp642. Epub 2009 Nov 17.
Bioinformatics. 2010.
PMID: 19933161
Item in Clipboard
Parameter balancing in kinetic models of cell metabolism.
Lubitz T, Schulz M, Klipp E, Liebermeister W.
Lubitz T, et al.
J Phys Chem B. 2010 Dec 16;114(49):16298-303. doi: 10.1021/jp108764b. Epub 2010 Nov 1.
J Phys Chem B. 2010.
PMID: 21038890
Free PMC article.
Item in Clipboard
SBtab: a flexible table format for data exchange in systems biology.
Lubitz T, Hahn J, Bergmann FT, Noor E, Klipp E, Liebermeister W.
Lubitz T, et al.
Bioinformatics. 2016 Aug 15;32(16):2559-61. doi: 10.1093/bioinformatics/btw179. Epub 2016 Apr 8.
Bioinformatics. 2016.
PMID: 27153616
Free PMC article.
Item in Clipboard
Systematic construction of kinetic models from genome-scale metabolic networks.
Stanford NJ, Lubitz T, Smallbone K, Klipp E, Mendes P, Liebermeister W.
Stanford NJ, et al. Among authors: lubitz t.
PLoS One. 2013 Nov 14;8(11):e79195. doi: 10.1371/journal.pone.0079195. eCollection 2013.
PLoS One. 2013.
PMID: 24324546
Free PMC article.
Item in Clipboard
Parameter balancing: consistent parameter sets for kinetic metabolic models.
Lubitz T, Liebermeister W.
Lubitz T, et al.
Bioinformatics. 2019 Oct 1;35(19):3857-3858. doi: 10.1093/bioinformatics/btz129.
Bioinformatics. 2019.
PMID: 30793200
Free PMC article.
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