Noble WS - Search Results

1

PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data.

Ting YS, Egertson JD, Bollinger JG, Searle BC, Payne SH, Noble WS, MacCoss MJ. Ting YS, et al. Among authors: noble ws. Nat Methods. 2017 Sep;14(9):903-908. doi: 10.1038/nmeth.4390. Epub 2017 Aug 7. Nat Methods. 2017. PMID: 28783153 Free PMC article.

2

Assessing computational tools for the discovery of transcription factor binding sites.

Tompa M, Li N, Bailey TL, Church GM, De Moor B, Eskin E, Favorov AV, Frith MC, Fu Y, Kent WJ, Makeev VJ, Mironov AA, Noble WS, Pavesi G, Pesole G, Régnier M, Simonis N, Sinha S, Thijs G, van Helden J, Vandenbogaert M, Weng Z, Workman C, Ye C, Zhu Z. Tompa M, et al. Among authors: noble ws. Nat Biotechnol. 2005 Jan;23(1):137-44. doi: 10.1038/nbt1053. Nat Biotechnol. 2005. PMID: 15637633 Free article.

3

Peptide charge state determination for low-resolution tandem mass spectra.

Klammer AA, Wu CC, MacCoss MJ, Noble WS. Klammer AA, et al. Among authors: noble ws. Proc IEEE Comput Syst Bioinform Conf. 2005:175-85. doi: 10.1109/csb.2005.44. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447975

4

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A, Weaver M, Shafer A, Lee K, Neri F, Humbert R, Singer MA, Richmond TA, Dorschner MO, McArthur M, Hawrylycz M, Green RD, Navas PA, Noble WS, Stamatoyannopoulos JA. Sabo PJ, et al. Among authors: noble ws. Nat Methods. 2006 Jul;3(7):511-8. doi: 10.1038/nmeth890. Nat Methods. 2006. PMID: 16791208

5

Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.

Frewen BE, Merrihew GE, Wu CC, Noble WS, MacCoss MJ. Frewen BE, et al. Among authors: noble ws. Anal Chem. 2006 Aug 15;78(16):5678-84. doi: 10.1021/ac060279n. Anal Chem. 2006. PMID: 16906711

6

Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions.

Klammer AA, Yi X, MacCoss MJ, Noble WS. Klammer AA, et al. Among authors: noble ws. Anal Chem. 2007 Aug 15;79(16):6111-8. doi: 10.1021/ac070262k. Epub 2007 Jul 11. Anal Chem. 2007. PMID: 17622186

7

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

Käll L, Canterbury JD, Weston J, Noble WS, MacCoss MJ. Käll L, et al. Among authors: noble ws. Nat Methods. 2007 Nov;4(11):923-5. doi: 10.1038/nmeth1113. Epub 2007 Oct 21. Nat Methods. 2007. PMID: 17952086

8

Posterior error probabilities and false discovery rates: two sides of the same coin.

Käll L, Storey JD, MacCoss MJ, Noble WS. Käll L, et al. Among authors: noble ws. J Proteome Res. 2008 Jan;7(1):40-4. doi: 10.1021/pr700739d. Epub 2007 Dec 4. J Proteome Res. 2008. PMID: 18052118 Review.

9

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases.

Käll L, Storey JD, MacCoss MJ, Noble WS. Käll L, et al. Among authors: noble ws. J Proteome Res. 2008 Jan;7(1):29-34. doi: 10.1021/pr700600n. Epub 2007 Dec 8. J Proteome Res. 2008. PMID: 18067246 Review.

10

Rapid and accurate peptide identification from tandem mass spectra.

Park CY, Klammer AA, Käll L, MacCoss MJ, Noble WS. Park CY, et al. Among authors: noble ws. J Proteome Res. 2008 Jul;7(7):3022-7. doi: 10.1021/pr800127y. Epub 2008 May 28. J Proteome Res. 2008. PMID: 18505281 Free PMC article.

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