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Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC. Sczyrba A, et al. Among authors: vorholt ja. Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2. Nat Methods. 2017. PMID: 28967888 Free PMC article.
Functional overlap of the Arabidopsis leaf and root microbiota.
Bai Y, Müller DB, Srinivas G, Garrido-Oter R, Potthoff E, Rott M, Dombrowski N, Münch PC, Spaepen S, Remus-Emsermann M, Hüttel B, McHardy AC, Vorholt JA, Schulze-Lefert P. Bai Y, et al. Among authors: vorholt ja. Nature. 2015 Dec 17;528(7582):364-9. doi: 10.1038/nature16192. Epub 2015 Dec 2. Nature. 2015. PMID: 26633631
The Plant Microbiota: Systems-Level Insights and Perspectives.
Müller DB, Vogel C, Bai Y, Vorholt JA. Müller DB, et al. Among authors: vorholt ja. Annu Rev Genet. 2016 Nov 23;50:211-234. doi: 10.1146/annurev-genet-120215-034952. Epub 2016 Sep 14. Annu Rev Genet. 2016. PMID: 27648643 Review.
Genomic features of bacterial adaptation to plants.
Levy A, Salas Gonzalez I, Mittelviefhaus M, Clingenpeel S, Herrera Paredes S, Miao J, Wang K, Devescovi G, Stillman K, Monteiro F, Rangel Alvarez B, Lundberg DS, Lu TY, Lebeis S, Jin Z, McDonald M, Klein AP, Feltcher ME, Rio TG, Grant SR, Doty SL, Ley RE, Zhao B, Venturi V, Pelletier DA, Vorholt JA, Tringe SG, Woyke T, Dangl JL. Levy A, et al. Among authors: vorholt ja. Nat Genet. 2017 Dec 18;50(1):138-150. doi: 10.1038/s41588-017-0012-9. Nat Genet. 2017. PMID: 29255260 Free PMC article.
Methanol-essential growth of Escherichia coli.
Meyer F, Keller P, Hartl J, Gröninger OG, Kiefer P, Vorholt JA. Meyer F, et al. Among authors: vorholt ja. Nat Commun. 2018 Apr 17;9(1):1508. doi: 10.1038/s41467-018-03937-y. Nat Commun. 2018. PMID: 29666370 Free PMC article.
192 results