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Systematic, network-based characterization of therapeutic target inhibitors.
Shen Y, Alvarez MJ, Bisikirska B, Lachmann A, Realubit R, Pampou S, Coku J, Karan C, Califano A. Shen Y, et al. Among authors: lachmann a. PLoS Comput Biol. 2017 Oct 12;13(10):e1005599. doi: 10.1371/journal.pcbi.1005599. eCollection 2017 Oct. PLoS Comput Biol. 2017. PMID: 29023443 Free PMC article.
Detection and removal of spatial bias in multiwell assays.
Lachmann A, Giorgi FM, Alvarez MJ, Califano A. Lachmann A, et al. Bioinformatics. 2016 Jul 1;32(13):1959-65. doi: 10.1093/bioinformatics/btw092. Epub 2016 Feb 28. Bioinformatics. 2016. PMID: 27153732
Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses.
Broyde J, Simpson DR, Murray D, Paull EO, Chu BW, Tagore S, Jones SJ, Griffin AT, Giorgi FM, Lachmann A, Jackson P, Sweet-Cordero EA, Honig B, Califano A. Broyde J, et al. Among authors: lachmann a. Nat Biotechnol. 2021 Feb;39(2):215-224. doi: 10.1038/s41587-020-0652-7. Epub 2020 Sep 14. Nat Biotechnol. 2021. PMID: 32929263 Free PMC article.
KEA: kinase enrichment analysis.
Lachmann A, Ma'ayan A. Lachmann A, et al. Bioinformatics. 2009 Mar 1;25(5):684-6. doi: 10.1093/bioinformatics/btp026. Epub 2009 Jan 28. Bioinformatics. 2009. PMID: 19176546 Free PMC article.
FNV: light-weight flash-based network and pathway viewer.
Dannenfelser R, Lachmann A, Szenk M, Ma'ayan A. Dannenfelser R, et al. Among authors: lachmann a. Bioinformatics. 2011 Apr 15;27(8):1181-2. doi: 10.1093/bioinformatics/btr098. Epub 2011 Feb 23. Bioinformatics. 2011. PMID: 21349871 Free PMC article.
69 results