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Network inference from glycoproteomics data reveals new reactions in the IgG glycosylation pathway.
Benedetti E, Pučić-Baković M, Keser T, Wahl A, Hassinen A, Yang JY, Liu L, Trbojević-Akmačić I, Razdorov G, Štambuk J, Klarić L, Ugrina I, Selman MHJ, Wuhrer M, Rudan I, Polasek O, Hayward C, Grallert H, Strauch K, Peters A, Meitinger T, Gieger C, Vilaj M, Boons GJ, Moremen KW, Ovchinnikova T, Bovin N, Kellokumpu S, Theis FJ, Lauc G, Krumsiek J. Benedetti E, et al. Among authors: selman mhj. Nat Commun. 2017 Nov 14;8(1):1483. doi: 10.1038/s41467-017-01525-0. Nat Commun. 2017. PMID: 29133956 Free PMC article.
Publisher Correction: Network inference from glycoproteomics data reveals new reactions in the IgG glycosylation pathway.
Benedetti E, Pučić-Baković M, Keser T, Wahl A, Hassinen A, Yang JY, Liu L, Trbojević-Akmačić I, Razdorov G, Štambuk J, Klarić L, Ugrina I, Selman MHJ, Wuhrer M, Rudan I, Polasek O, Hayward C, Grallert H, Strauch K, Peters A, Meitinger T, Gieger C, Vilaj M, Boons GJ, Moremen KW, Ovchinnikova T, Bovin N, Kellokumpu S, Theis FJ, Lauc G, Krumsiek J. Benedetti E, et al. Among authors: selman mhj. Nat Commun. 2018 Feb 13;9(1):706. doi: 10.1038/s41467-017-02379-2. Nat Commun. 2018. PMID: 29440641 Free PMC article.
A strategy to incorporate prior knowledge into correlation network cutoff selection.
Benedetti E, Pučić-Baković M, Keser T, Gerstner N, Büyüközkan M, Štambuk T, Selman MHJ, Rudan I, Polašek O, Hayward C, Al-Amin H, Suhre K, Kastenmüller G, Lauc G, Krumsiek J. Benedetti E, et al. Among authors: selman mhj. Nat Commun. 2020 Oct 14;11(1):5153. doi: 10.1038/s41467-020-18675-3. Nat Commun. 2020. PMID: 33056991 Free PMC article.
IgG glycosylation analysis.
Huhn C, Selman MH, Ruhaak LR, Deelder AM, Wuhrer M. Huhn C, et al. Proteomics. 2009 Feb;9(4):882-913. doi: 10.1002/pmic.200800715. Proteomics. 2009. PMID: 19212958 Review.
Comparative performance of four methods for high-throughput glycosylation analysis of immunoglobulin G in genetic and epidemiological research.
Huffman JE, Pučić-Baković M, Klarić L, Hennig R, Selman MH, Vučković F, Novokmet M, Krištić J, Borowiak M, Muth T, Polašek O, Razdorov G, Gornik O, Plomp R, Theodoratou E, Wright AF, Rudan I, Hayward C, Campbell H, Deelder AM, Reichl U, Aulchenko YS, Rapp E, Wuhrer M, Lauc G. Huffman JE, et al. Mol Cell Proteomics. 2014 Jun;13(6):1598-610. doi: 10.1074/mcp.M113.037465. Epub 2014 Apr 9. Mol Cell Proteomics. 2014. PMID: 24719452 Free PMC article.
Systematic Evaluation of Normalization Methods for Glycomics Data Based on Performance of Network Inference.
Benedetti E, Gerstner N, Pučić-Baković M, Keser T, Reiding KR, Ruhaak LR, Štambuk T, Selman MHJ, Rudan I, Polašek O, Hayward C, Beekman M, Slagboom E, Wuhrer M, Dunlop MG, Lauc G, Krumsiek J. Benedetti E, et al. Among authors: selman mhj. Metabolites. 2020 Jul 2;10(7):271. doi: 10.3390/metabo10070271. Metabolites. 2020. PMID: 32630764 Free PMC article.
30 results