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Empirical comparison of reduced representation bisulfite sequencing and Infinium BeadChip reproducibility and coverage of DNA methylation in humans.
Carmona JJ, Accomando WP Jr, Binder AM, Hutchinson JN, Pantano L, Izzi B, Just AC, Lin X, Schwartz J, Vokonas PS, Amr SS, Baccarelli AA, Michels KB. Carmona JJ, et al. Among authors: pantano l. NPJ Genom Med. 2017 Apr 19;2:13. doi: 10.1038/s41525-017-0012-9. eCollection 2017. NPJ Genom Med. 2017. PMID: 29263828 Free PMC article.
Visualization of the small RNA transcriptome using seqclusterViz.
Pantano L, Pantano F, Marti E, Ho Sui S. Pantano L, et al. Among authors: pantano f. F1000Res. 2019 Feb 28;8:ISCB Comm J-232. doi: 10.12688/f1000research.18142.2. eCollection 2019. F1000Res. 2019. PMID: 30984380 Free PMC article.
Maintenance of macrophage transcriptional programs and intestinal homeostasis by epigenetic reader SP140.
Mehta S, Cronkite DA, Basavappa M, Saunders TL, Adiliaghdam F, Amatullah H, Morrison SA, Pagan JD, Anthony RM, Tonnerre P, Lauer GM, Lee JC, Digumarthi S, Pantano L, Ho Sui SJ, Ji F, Sadreyev R, Zhou C, Mullen AC, Kumar V, Li Y, Wijmenga C, Xavier RJ, Means TK, Jeffrey KL. Mehta S, et al. Among authors: pantano l. Sci Immunol. 2017 Mar 3;2(9):eaag3160. doi: 10.1126/sciimmunol.aag3160. Epub 2017 Mar 3. Sci Immunol. 2017. PMID: 28783698 Free PMC article.
Viewing RNA-seq data on the entire human genome.
Weitz EM, Pantano L, Zhu J, Upton B, Busby B. Weitz EM, et al. Among authors: pantano l. F1000Res. 2017 Apr 28;6:596. doi: 10.12688/f1000research.9762.1. eCollection 2017. F1000Res. 2017. PMID: 28979763 Free PMC article.
Circulating miRNAs, isomiRs and small RNA clusters in human plasma and breast milk.
Rubio M, Bustamante M, Hernandez-Ferrer C, Fernandez-Orth D, Pantano L, Sarria Y, Piqué-Borras M, Vellve K, Agramunt S, Carreras R, Estivill X, Gonzalez JR, Mayor A. Rubio M, et al. Among authors: pantano l. PLoS One. 2018 Mar 5;13(3):e0193527. doi: 10.1371/journal.pone.0193527. eCollection 2018. PLoS One. 2018. PMID: 29505615 Free PMC article.
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Desvignes T, et al. Among authors: pantano l. Bioinformatics. 2020 Feb 1;36(3):698-703. doi: 10.1093/bioinformatics/btz675. Bioinformatics. 2020. PMID: 31504201 Free PMC article.
76 results