Habermann B - Search Results

1

High-resolution TADs reveal DNA sequences underlying genome organization in flies.

Ramírez F, Bhardwaj V, Arrigoni L, Lam KC, Grüning BA, Villaveces J, Habermann B, Akhtar A, Manke T. Ramírez F, et al. Among authors: habermann b. Nat Commun. 2018 Jan 15;9(1):189. doi: 10.1038/s41467-017-02525-w. Nat Commun. 2018. PMID: 29335486 Free PMC article.

2

Tools for visualization and analysis of molecular networks, pathways, and -omics data.

Villaveces JM, Koti P, Habermann BH. Villaveces JM, et al. Adv Appl Bioinform Chem. 2015 Jun 4;8:11-22. doi: 10.2147/AABC.S63534. eCollection 2015. Adv Appl Bioinform Chem. 2015. PMID: 26082651 Free PMC article. Review.

3

PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers.

Villaveces JM, Jimenez RC, Habermann BH. Villaveces JM, et al. F1000Res. 2014 Feb 13;3:44. doi: 10.12688/f1000research.3-44.v1. eCollection 2014. F1000Res. 2014. PMID: 25075287 Free PMC article.

4

morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring.

Wagner I, Volkmer M, Sharan M, Villaveces JM, Oswald F, Surendranath V, Habermann BH. Wagner I, et al. BMC Bioinformatics. 2014 Aug 6;15(1):263. doi: 10.1186/1471-2105-15-263. BMC Bioinformatics. 2014. PMID: 25096057 Free PMC article.

5

KEGGViewer, a BioJS component to visualize KEGG Pathways.

Villaveces JM, Jimenez RC, Habermann BH. Villaveces JM, et al. F1000Res. 2014 Feb 13;3:43. doi: 10.12688/f1000research.3-43.v1. eCollection 2014. F1000Res. 2014. PMID: 24715980 Free PMC article.

6

mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations.

Yim A, Koti P, Bonnard A, Marchiano F, Dürrbaum M, Garcia-Perez C, Villaveces J, Gamal S, Cardone G, Perocchi F, Storchova Z, Habermann BH. Yim A, et al. Nucleic Acids Res. 2020 Jan 24;48(2):605-632. doi: 10.1093/nar/gkz1128. Nucleic Acids Res. 2020. PMID: 31799603 Free PMC article.

7

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study.

Villaveces JM, Jiménez RC, Porras P, Del-Toro N, Duesbury M, Dumousseau M, Orchard S, Choi H, Ping P, Zong NC, Askenazi M, Habermann BH, Hermjakob H. Villaveces JM, et al. Among authors: habermann bh. Database (Oxford). 2015 Feb 4;2015:bau131. doi: 10.1093/database/bau131. Print 2015. Database (Oxford). 2015. PMID: 25652942 Free PMC article.

8

Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer.

Arechederra M, Daian F, Yim A, Bazai SK, Richelme S, Dono R, Saurin AJ, Habermann BH, Maina F. Arechederra M, et al. Nat Commun. 2018 Aug 8;9(1):3164. doi: 10.1038/s41467-018-05550-5. Nat Commun. 2018. PMID: 30089774 Free PMC article.

9

mRNA export through an additional cap-binding complex consisting of NCBP1 and NCBP3.

Gebhardt A, Habjan M, Benda C, Meiler A, Haas DA, Hein MY, Mann A, Mann M, Habermann B, Pichlmair A. Gebhardt A, et al. Among authors: habermann b. Nat Commun. 2015 Sep 18;6:8192. doi: 10.1038/ncomms9192. Nat Commun. 2015. PMID: 26382858 Free PMC article.

10

Publisher Correction: Hypermethylation of gene body CpG islands predicts high dosage of functional oncogenes in liver cancer.

Arechederra M, Daian F, Yim A, Bazai SK, Richelme S, Dono R, Saurin AJ, Habermann BH, Maina F. Arechederra M, et al. Nat Commun. 2018 Sep 25;9(1):3976. doi: 10.1038/s41467-018-06482-w. Nat Commun. 2018. PMID: 30254310 Free PMC article.

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