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Pan-cancer screen for mutations in non-coding elements with conservation and cancer specificity reveals correlations with expression and survival.
Hornshøj H, Nielsen MM, Sinnott-Armstrong NA, Świtnicki MP, Juul M, Madsen T, Sallari R, Kellis M, Ørntoft T, Hobolth A, Pedersen JS. Hornshøj H, et al. Among authors: pedersen js. NPJ Genom Med. 2018 Jan 11;3:1. doi: 10.1038/s41525-017-0040-5. eCollection 2018. NPJ Genom Med. 2018. PMID: 29354286 Free PMC article.
Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis.
Thorsen K, Schepeler T, Øster B, Rasmussen MH, Vang S, Wang K, Hansen KQ, Lamy P, Pedersen JS, Eller A, Mansilla F, Laurila K, Wiuf C, Laurberg S, Dyrskjøt L, Ørntoft TF, Andersen CL. Thorsen K, et al. Among authors: pedersen js. BMC Genomics. 2011 Oct 14;12:505. doi: 10.1186/1471-2164-12-505. BMC Genomics. 2011. PMID: 21999571 Free PMC article.
Identification of expressed and conserved human noncoding RNAs.
Nielsen MM, Tehler D, Vang S, Sudzina F, Hedegaard J, Nordentoft I, Orntoft TF, Lund AH, Pedersen JS. Nielsen MM, et al. Among authors: pedersen js. RNA. 2014 Feb;20(2):236-51. doi: 10.1261/rna.038927.113. Epub 2013 Dec 16. RNA. 2014. PMID: 24344320 Free PMC article.
Mutational context and diverse clonal development in early and late bladder cancer.
Nordentoft I, Lamy P, Birkenkamp-Demtröder K, Shumansky K, Vang S, Hornshøj H, Juul M, Villesen P, Hedegaard J, Roth A, Thorsen K, Høyer S, Borre M, Reinert T, Fristrup N, Dyrskjøt L, Shah S, Pedersen JS, Ørntoft TF. Nordentoft I, et al. Among authors: pedersen js. Cell Rep. 2014 Jun 12;7(5):1649-1663. doi: 10.1016/j.celrep.2014.04.038. Epub 2014 May 15. Cell Rep. 2014. PMID: 24835989 Free article.
A dual program for translation regulation in cellular proliferation and differentiation.
Gingold H, Tehler D, Christoffersen NR, Nielsen MM, Asmar F, Kooistra SM, Christophersen NS, Christensen LL, Borre M, Sørensen KD, Andersen LD, Andersen CL, Hulleman E, Wurdinger T, Ralfkiær E, Helin K, Grønbæk K, Ørntoft T, Waszak SM, Dahan O, Pedersen JS, Lund AH, Pilpel Y. Gingold H, et al. Among authors: pedersen js. Cell. 2014 Sep 11;158(6):1281-1292. doi: 10.1016/j.cell.2014.08.011. Cell. 2014. PMID: 25215487 Free article.
Comprehensive Transcriptional Analysis of Early-Stage Urothelial Carcinoma.
Hedegaard J, Lamy P, Nordentoft I, Algaba F, Høyer S, Ulhøi BP, Vang S, Reinert T, Hermann GG, Mogensen K, Thomsen MBH, Nielsen MM, Marquez M, Segersten U, Aine M, Höglund M, Birkenkamp-Demtröder K, Fristrup N, Borre M, Hartmann A, Stöhr R, Wach S, Keck B, Seitz AK, Nawroth R, Maurer T, Tulic C, Simic T, Junker K, Horstmann M, Harving N, Petersen AC, Calle ML, Steyerberg EW, Beukers W, van Kessel KEM, Jensen JB, Pedersen JS, Malmström PU, Malats N, Real FX, Zwarthoff EC, Ørntoft TF, Dyrskjøt L. Hedegaard J, et al. Among authors: pedersen js. Cancer Cell. 2016 Jul 11;30(1):27-42. doi: 10.1016/j.ccell.2016.05.004. Epub 2016 Jun 16. Cancer Cell. 2016. PMID: 27321955 Free article.
miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells.
Rasmussen MH, Lyskjær I, Jersie-Christensen RR, Tarpgaard LS, Primdal-Bengtson B, Nielsen MM, Pedersen JS, Hansen TP, Hansen F, Olsen JV, Pfeiffer P, Ørntoft TF, Andersen CL. Rasmussen MH, et al. Among authors: pedersen js. Nat Commun. 2016 Aug 16;7:12436. doi: 10.1038/ncomms12436. Nat Commun. 2016. PMID: 27526785 Free PMC article.
465 results