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An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.
Corces MR, Trevino AE, Hamilton EG, Greenside PG, Sinnott-Armstrong NA, Vesuna S, Satpathy AT, Rubin AJ, Montine KS, Wu B, Kathiria A, Cho SW, Mumbach MR, Carter AC, Kasowski M, Orloff LA, Risca VI, Kundaje A, Khavari PA, Montine TJ, Greenleaf WJ, Chang HY. Corces MR, et al. Among authors: greenleaf wj. Nat Methods. 2017 Oct;14(10):959-962. doi: 10.1038/nmeth.4396. Epub 2017 Aug 28. Nat Methods. 2017. PMID: 28846090 Free PMC article.
Long-range single-molecule mapping of chromatin accessibility in eukaryotes.
Shipony Z, Marinov GK, Swaffer MP, Sinnott-Armstrong NA, Skotheim JM, Kundaje A, Greenleaf WJ. Shipony Z, et al. Among authors: greenleaf wj. Nat Methods. 2020 Mar;17(3):319-327. doi: 10.1038/s41592-019-0730-2. Epub 2020 Feb 10. Nat Methods. 2020. PMID: 32042188 Free PMC article.
Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries.
Carpenter ML, Buenrostro JD, Valdiosera C, Schroeder H, Allentoft ME, Sikora M, Rasmussen M, Gravel S, Guillén S, Nekhrizov G, Leshtakov K, Dimitrova D, Theodossiev N, Pettener D, Luiselli D, Sandoval K, Moreno-Estrada A, Li Y, Wang J, Gilbert MT, Willerslev E, Greenleaf WJ, Bustamante CD. Carpenter ML, et al. Among authors: greenleaf wj. Am J Hum Genet. 2013 Nov 7;93(5):852-64. doi: 10.1016/j.ajhg.2013.10.002. Epub 2013 Oct 25. Am J Hum Genet. 2013. PMID: 24568772 Free PMC article.
ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.
Buenrostro JD, Wu B, Chang HY, Greenleaf WJ. Buenrostro JD, et al. Among authors: greenleaf wj. Curr Protoc Mol Biol. 2015 Jan 5;109:21.29.1-21.29.9. doi: 10.1002/0471142727.mb2129s109. Curr Protoc Mol Biol. 2015. PMID: 25559105 Free PMC article.
177 results