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CardioClassifier: disease- and gene-specific computational decision support for clinical genome interpretation.
Genet Med. 2018 Oct;20(10):1246-1254. doi: 10.1038/gim.2017.258. Epub 2018 Jan 25.
Genet Med. 2018.
PMID: 29369293
Free PMC article.
CELLector: Genomics-Guided Selection of Cancer In Vitro Models.
Najgebauer H, Yang M, Francies HE, Pacini C, Stronach EA, Garnett MJ, Saez-Rodriguez J, Iorio F.
Najgebauer H, et al.
Cell Syst. 2020 May 20;10(5):424-432.e6. doi: 10.1016/j.cels.2020.04.007.
Cell Syst. 2020.
PMID: 32437684
Free article.
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Agreement between two large pan-cancer CRISPR-Cas9 gene dependency data sets.
Dempster JM, Pacini C, Pantel S, Behan FM, Green T, Krill-Burger J, Beaver CM, Younger ST, Zhivich V, Najgebauer H, Allen F, Gonçalves E, Shepherd R, Doench JG, Yusa K, Vazquez F, Parts L, Boehm JS, Golub TR, Hahn WC, Root DE, Garnett MJ, Tsherniak A, Iorio F.
Dempster JM, et al. Among authors: najgebauer h.
Nat Commun. 2019 Dec 20;10(1):5817. doi: 10.1038/s41467-019-13805-y.
Nat Commun. 2019.
PMID: 31862961
Free PMC article.
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Integrated cross-study datasets of genetic dependencies in cancer.
Pacini C, Dempster JM, Boyle I, Gonçalves E, Najgebauer H, Karakoc E, van der Meer D, Barthorpe A, Lightfoot H, Jaaks P, McFarland JM, Garnett MJ, Tsherniak A, Iorio F.
Pacini C, et al. Among authors: najgebauer h.
Nat Commun. 2021 Mar 12;12(1):1661. doi: 10.1038/s41467-021-21898-7.
Nat Commun. 2021.
PMID: 33712601
Free PMC article.
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An integrated landscape of protein expression in human cancer.
Jarnuczak AF, Najgebauer H, Barzine M, Kundu DJ, Ghavidel F, Perez-Riverol Y, Papatheodorou I, Brazma A, Vizcaíno JA.
Jarnuczak AF, et al. Among authors: najgebauer h.
Sci Data. 2021 Apr 23;8(1):115. doi: 10.1038/s41597-021-00890-2.
Sci Data. 2021.
PMID: 33893311
Free PMC article.
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Integrative Omic Profiling Reveals Unique Hypoxia Induced Signatures in Gastric Cancer Associated Myofibroblasts.
Najgebauer H, Jarnuczak AF, Varro A, Sanderson CM.
Najgebauer H, et al.
Cancers (Basel). 2019 Feb 23;11(2):263. doi: 10.3390/cancers11020263.
Cancers (Basel). 2019.
PMID: 30813438
Free PMC article.
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Integrated omics profiling reveals novel patterns of epigenetic programming in cancer-associated myofibroblasts.
Najgebauer H, Liloglou T, Jithesh PV, Giger OT, Varro A, Sanderson CM.
Najgebauer H, et al.
Carcinogenesis. 2019 Jun 10;40(4):500-512. doi: 10.1093/carcin/bgz001.
Carcinogenesis. 2019.
PMID: 30624614
Free PMC article.
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Redefining false discoveries in cancer data analyses.
Najgebauer H, Perron U, Iorio F.
Najgebauer H, et al.
Nat Comput Sci. 2021 Jan;1(1):22-23. doi: 10.1038/s43588-020-00008-5.
Nat Comput Sci. 2021.
PMID: 38217149
No abstract available.
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