Burkholder AB - Search Results

1

Evidence that DNA polymerase δ contributes to initiating leading strand DNA replication in Saccharomyces cerevisiae.

Garbacz MA, Lujan SA, Burkholder AB, Cox PB, Wu Q, Zhou ZX, Haber JE, Kunkel TA. Garbacz MA, et al. Among authors: burkholder ab. Nat Commun. 2018 Feb 27;9(1):858. doi: 10.1038/s41467-018-03270-4. Nat Commun. 2018. PMID: 29487291 Free PMC article.

2

Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition.

Lujan SA, Clausen AR, Clark AB, MacAlpine HK, MacAlpine DM, Malc EP, Mieczkowski PA, Burkholder AB, Fargo DC, Gordenin DA, Kunkel TA. Lujan SA, et al. Among authors: burkholder ab. Genome Res. 2014 Nov;24(11):1751-64. doi: 10.1101/gr.178335.114. Epub 2014 Sep 12. Genome Res. 2014. PMID: 25217194 Free PMC article.

3

Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation.

Clausen AR, Lujan SA, Burkholder AB, Orebaugh CD, Williams JS, Clausen MF, Malc EP, Mieczkowski PA, Fargo DC, Smith DJ, Kunkel TA. Clausen AR, et al. Among authors: burkholder ab. Nat Struct Mol Biol. 2015 Mar;22(3):185-91. doi: 10.1038/nsmb.2957. Epub 2015 Jan 26. Nat Struct Mol Biol. 2015. PMID: 25622295 Free PMC article.

4

Mapping Ribonucleotides Incorporated into DNA by Hydrolytic End-Sequencing.

Orebaugh CD, Lujan SA, Burkholder AB, Clausen AR, Kunkel TA. Orebaugh CD, et al. Among authors: burkholder ab. Methods Mol Biol. 2018;1672:329-345. doi: 10.1007/978-1-4939-7306-4_23. Methods Mol Biol. 2018. PMID: 29043634

5

Muver, a computational framework for accurately calling accumulated mutations.

Burkholder AB, Lujan SA, Lavender CA, Grimm SA, Kunkel TA, Fargo DC. Burkholder AB, et al. BMC Genomics. 2018 May 9;19(1):345. doi: 10.1186/s12864-018-4753-3. BMC Genomics. 2018. PMID: 29743009 Free PMC article.

6

Epithelial RNase H2 Maintains Genome Integrity and Prevents Intestinal Tumorigenesis in Mice.

Aden K, Bartsch K, Dahl J, Reijns MAM, Esser D, Sheibani-Tezerji R, Sinha A, Wottawa F, Ito G, Mishra N, Knittler K, Burkholder A, Welz L, van Es J, Tran F, Lipinski S, Kakavand N, Boeger C, Lucius R, von Schoenfels W, Schafmayer C, Lenk L, Chalaris A, Clevers H, Röcken C, Kaleta C, Rose-John S, Schreiber S, Kunkel T, Rabe B, Rosenstiel P. Aden K, et al. Gastroenterology. 2019 Jan;156(1):145-159.e19. doi: 10.1053/j.gastro.2018.09.047. Epub 2018 Sep 28. Gastroenterology. 2019. PMID: 30273559 Free PMC article.

7

DNA methylation in mice is influenced by genetics as well as sex and life experience.

Grimm SA, Shimbo T, Takaku M, Thomas JW, Auerbach S, Bennett BD, Bucher JR, Burkholder AB, Day F, Du Y, Duncan CG, French JE, Foley JF, Li J, Merrick BA, Tice RR, Wang T, Xu X; NISC Comparative Sequencing Program; Bushel PR, Fargo DC, Mullikin JC, Wade PA. Grimm SA, et al. Among authors: burkholder ab. Nat Commun. 2019 Jan 18;10(1):305. doi: 10.1038/s41467-018-08067-z. Nat Commun. 2019. PMID: 30659182 Free PMC article.

8

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region.

Oldfield AJ, Henriques T, Kumar D, Burkholder AB, Cinghu S, Paulet D, Bennett BD, Yang P, Scruggs BS, Lavender CA, Rivals E, Adelman K, Jothi R. Oldfield AJ, et al. Among authors: burkholder ab. Nat Commun. 2019 Jul 11;10(1):3072. doi: 10.1038/s41467-019-10905-7. Nat Commun. 2019. PMID: 31296853 Free PMC article.

9

Genome-wide mutagenesis resulting from topoisomerase 1-processing of unrepaired ribonucleotides in DNA.

Williams JS, Lujan SA, Zhou ZX, Burkholder AB, Clark AB, Fargo DC, Kunkel TA. Williams JS, et al. Among authors: burkholder ab. DNA Repair (Amst). 2019 Dec;84:102641. doi: 10.1016/j.dnarep.2019.102641. Epub 2019 Jul 3. DNA Repair (Amst). 2019. PMID: 31311768 Free PMC article.

10

Roles for DNA polymerase δ in initiating and terminating leading strand DNA replication.

Zhou ZX, Lujan SA, Burkholder AB, Garbacz MA, Kunkel TA. Zhou ZX, et al. Among authors: burkholder ab. Nat Commun. 2019 Sep 5;10(1):3992. doi: 10.1038/s41467-019-11995-z. Nat Commun. 2019. PMID: 31488849 Free PMC article.

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