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Whither systems medicine?
Apweiler R, Beissbarth T, Berthold MR, Blüthgen N, Burmeister Y, Dammann O, Deutsch A, Feuerhake F, Franke A, Hasenauer J, Hoffmann S, Höfer T, Jansen PL, Kaderali L, Klingmüller U, Koch I, Kohlbacher O, Kuepfer L, Lammert F, Maier D, Pfeifer N, Radde N, Rehm M, Roeder I, Saez-Rodriguez J, Sax U, Schmeck B, Schuppert A, Seilheimer B, Theis FJ, Vera J, Wolkenhauer O. Apweiler R, et al. Among authors: berthold mr. Exp Mol Med. 2018 Mar 2;50(3):e453. doi: 10.1038/emm.2017.290. Exp Mol Med. 2018. PMID: 29497170 Free PMC article. Review.
The coming of age of artificial intelligence in medicine.
Patel VL, Shortliffe EH, Stefanelli M, Szolovits P, Berthold MR, Bellazzi R, Abu-Hanna A. Patel VL, et al. Among authors: berthold mr. Artif Intell Med. 2009 May;46(1):5-17. doi: 10.1016/j.artmed.2008.07.017. Epub 2008 Sep 13. Artif Intell Med. 2009. PMID: 18790621 Free PMC article.
Development of a neural rosette formation assay (RoFA) to identify neurodevelopmental toxicants and to characterize their transcriptome disturbances.
Dreser N, Madjar K, Holzer AK, Kapitza M, Scholz C, Kranaster P, Gutbier S, Klima S, Kolb D, Dietz C, Trefzer T, Meisig J, van Thriel C, Henry M, Berthold MR, Blüthgen N, Sachinidis A, Rahnenführer J, Hengstler JG, Waldmann T, Leist M. Dreser N, et al. Among authors: berthold mr. Arch Toxicol. 2020 Jan;94(1):151-171. doi: 10.1007/s00204-019-02612-5. Epub 2019 Nov 11. Arch Toxicol. 2020. PMID: 31712839
KNIME-CDK: Workflow-driven cheminformatics.
Beisken S, Meinl T, Wiswedel B, de Figueiredo LF, Berthold M, Steinbeck C. Beisken S, et al. BMC Bioinformatics. 2013 Aug 22;14:257. doi: 10.1186/1471-2105-14-257. BMC Bioinformatics. 2013. PMID: 24103053 Free PMC article.
From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects.
Balmer NV, Klima S, Rempel E, Ivanova VN, Kolde R, Weng MK, Meganathan K, Henry M, Sachinidis A, Berthold MR, Hengstler JG, Rahnenführer J, Waldmann T, Leist M. Balmer NV, et al. Among authors: berthold mr. Arch Toxicol. 2014 Jul;88(7):1451-68. doi: 10.1007/s00204-014-1279-6. Epub 2014 Jun 17. Arch Toxicol. 2014. PMID: 24935251 Free PMC article.
KNIME for Open-Source Bioimage Analysis: A Tutorial.
Dietz C, Berthold MR. Dietz C, et al. Among authors: berthold mr. Adv Anat Embryol Cell Biol. 2016;219:179-97. doi: 10.1007/978-3-319-28549-8_7. Adv Anat Embryol Cell Biol. 2016. PMID: 27207367
KNIME for reproducible cross-domain analysis of life science data.
Fillbrunn A, Dietz C, Pfeuffer J, Rahn R, Landrum GA, Berthold MR. Fillbrunn A, et al. Among authors: berthold mr. J Biotechnol. 2017 Nov 10;261:149-156. doi: 10.1016/j.jbiotec.2017.07.028. Epub 2017 Jul 27. J Biotechnol. 2017. PMID: 28757290 Free article. Review.
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