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Freiburg RNA tools: a central online resource for RNA-focused research and teaching.
Raden M, Ali SM, Alkhnbashi OS, Busch A, Costa F, Davis JA, Eggenhofer F, Gelhausen R, Georg J, Heyne S, Hiller M, Kundu K, Kleinkauf R, Lott SC, Mohamed MM, Mattheis A, Miladi M, Richter AS, Will S, Wolff J, Wright PR, Backofen R. Raden M, et al. Among authors: miladi m. Nucleic Acids Res. 2018 Jul 2;46(W1):W25-W29. doi: 10.1093/nar/gky329. Nucleic Acids Res. 2018. PMID: 29788132 Free PMC article.
A pan-cancer analysis of synonymous mutations.
Sharma Y, Miladi M, Dukare S, Boulay K, Caudron-Herger M, Groß M, Backofen R, Diederichs S. Sharma Y, et al. Among authors: miladi m. Nat Commun. 2019 Jun 12;10(1):2569. doi: 10.1038/s41467-019-10489-2. Nat Commun. 2019. PMID: 31189880 Free PMC article.
ShaKer: RNA SHAPE prediction using graph kernel.
Mautner S, Montaseri S, Miladi M, Raden M, Costa F, Backofen R. Mautner S, et al. Among authors: miladi m. Bioinformatics. 2019 Jul 15;35(14):i354-i359. doi: 10.1093/bioinformatics/btz395. Bioinformatics. 2019. PMID: 31510707 Free PMC article.
The locality dilemma of Sankoff-like RNA alignments.
Müller T, Miladi M, Hutter F, Hofacker I, Will S, Backofen R. Müller T, et al. Among authors: miladi m. Bioinformatics. 2020 Jul 1;36(Suppl_1):i242-i250. doi: 10.1093/bioinformatics/btaa431. Bioinformatics. 2020. PMID: 32657398 Free PMC article.
NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy.
de Koning W, Miladi M, Hiltemann S, Heikema A, Hays JP, Flemming S, van den Beek M, Mustafa DA, Backofen R, Grüning B, Stubbs AP. de Koning W, et al. Among authors: miladi m. Gigascience. 2020 Oct 17;9(10):giaa105. doi: 10.1093/gigascience/giaa105. Gigascience. 2020. PMID: 33068114 Free PMC article.
59 results