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The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease.
Cremers AJH, Mobegi FM, van der Gaast-de Jongh C, van Weert M, van Opzeeland FJ, Vehkala M, Knol MJ, Bootsma HJ, Välimäki N, Croucher NJ, Meis JF, Bentley S, van Hijum SAFT, Corander J, Zomer AL, Ferwerda G, de Jonge MI. Cremers AJH, et al. Among authors: corander j. Clin Infect Dis. 2019 Jan 1;68(1):61-69. doi: 10.1093/cid/ciy417. Clin Infect Dis. 2019. PMID: 29788414
Dense genomic sampling identifies highways of pneumococcal recombination.
Chewapreecha C, Harris SR, Croucher NJ, Turner C, Marttinen P, Cheng L, Pessia A, Aanensen DM, Mather AE, Page AJ, Salter SJ, Harris D, Nosten F, Goldblatt D, Corander J, Parkhill J, Turner P, Bentley SD. Chewapreecha C, et al. Among authors: corander j. Nat Genet. 2014 Mar;46(3):305-309. doi: 10.1038/ng.2895. Epub 2014 Feb 9. Nat Genet. 2014. PMID: 24509479 Free PMC article.
Two-phase importance sampling for inference about transmission trees.
Numminen E, Chewapreecha C, Sirén J, Turner C, Turner P, Bentley SD, Corander J. Numminen E, et al. Among authors: corander j. Proc Biol Sci. 2014 Nov 7;281(1794):20141324. doi: 10.1098/rspb.2014.1324. Proc Biol Sci. 2014. PMID: 25253455 Free PMC article.
Novel staphylococcal species that form part of a Staphylococcus aureus-related complex: the non-pigmented Staphylococcus argenteus sp. nov. and the non-human primate-associated Staphylococcus schweitzeri sp. nov.
Tong SYC, Schaumburg F, Ellington MJ, Corander J, Pichon B, Leendertz F, Bentley SD, Parkhill J, Holt DC, Peters G, Giffard PM. Tong SYC, et al. Among authors: corander j. Int J Syst Evol Microbiol. 2015 Jan;65(Pt 1):15-22. doi: 10.1099/ijs.0.062752-0. Epub 2014 Sep 30. Int J Syst Evol Microbiol. 2015. PMID: 25269845 Free PMC article.
Novel R pipeline for analyzing Biolog Phenotypic MicroArray data.
Vehkala M, Shubin M, Connor TR, Thomson NR, Corander J. Vehkala M, et al. Among authors: corander j. PLoS One. 2015 Mar 18;10(3):e0118392. doi: 10.1371/journal.pone.0118392. eCollection 2015. PLoS One. 2015. PMID: 25786143 Free PMC article.
Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.
Weinert LA, Chaudhuri RR, Wang J, Peters SE, Corander J, Jombart T, Baig A, Howell KJ, Vehkala M, Välimäki N, Harris D, Chieu TT, Van Vinh Chau N, Campbell J, Schultsz C, Parkhill J, Bentley SD, Langford PR, Rycroft AN, Wren BW, Farrar J, Baker S, Hoa NT, Holden MT, Tucker AW, Maskell DJ; BRaDP1T Consortium. Weinert LA, et al. Among authors: corander j. Nat Commun. 2015 Mar 31;6:6740. doi: 10.1038/ncomms7740. Nat Commun. 2015. PMID: 25824154 Free PMC article.
Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.
Weinert LA, Chaudhuri RR, Wang J, Peters SE, Corander J, Jombart T, Baig A, Howell KJ, Vehkala M, Välimäki N, Harris D, Chieu TT, Chau NV, Campbell J, Schultsz C, Parkhill J, Bentley SD, Langford PR, Rycroft AN, Wren BW, Farrar J, Baker S, Hoa NT, Holden MT, Tucker AW, Maskell DJ; BRaDP1T Consortium. Weinert LA, et al. Among authors: corander j. Nat Commun. 2015 May 12;6:7272. doi: 10.1038/ncomms8272. Nat Commun. 2015. PMID: 25966020 Free PMC article. No abstract available.
Climate induces seasonality in pneumococcal transmission.
Numminen E, Chewapreecha C, Turner C, Goldblatt D, Nosten F, Bentley SD, Turner P, Corander J. Numminen E, et al. Among authors: corander j. Sci Rep. 2015 Jun 12;5:11344. doi: 10.1038/srep11344. Sci Rep. 2015. PMID: 26067932 Free PMC article. Clinical Trial.
Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations.
McNally A, Oren Y, Kelly D, Pascoe B, Dunn S, Sreecharan T, Vehkala M, Välimäki N, Prentice MB, Ashour A, Avram O, Pupko T, Dobrindt U, Literak I, Guenther S, Schaufler K, Wieler LH, Zhiyong Z, Sheppard SK, McInerney JO, Corander J. McNally A, et al. Among authors: corander j. PLoS Genet. 2016 Sep 12;12(9):e1006280. doi: 10.1371/journal.pgen.1006280. eCollection 2016 Sep. PLoS Genet. 2016. PMID: 27618184 Free PMC article.
237 results