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Best practices for analysing microbiomes.
Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn RA, Sanders JG, Swafford AD, Thompson LR, Tripathi A, Xu ZZ, Zaneveld JR, Zhu Q, Caporaso JG, Dorrestein PC. Knight R, et al. Nat Rev Microbiol. 2018 Jul;16(7):410-422. doi: 10.1038/s41579-018-0029-9. Nat Rev Microbiol. 2018. PMID: 29795328 Review.
Origins of the genetic code: the escaped triplet theory.
Yarus M, Caporaso JG, Knight R. Yarus M, et al. Among authors: knight r. Annu Rev Biochem. 2005;74:179-98. doi: 10.1146/annurev.biochem.74.082803.133119. Annu Rev Biochem. 2005. PMID: 15952885 Review.
Host-bacterial coevolution and the search for new drug targets.
Zaneveld J, Turnbaugh PJ, Lozupone C, Ley RE, Hamady M, Gordon JI, Knight R. Zaneveld J, et al. Among authors: knight r. Curr Opin Chem Biol. 2008 Feb;12(1):109-14. doi: 10.1016/j.cbpa.2008.01.015. Epub 2008 Mar 5. Curr Opin Chem Biol. 2008. PMID: 18280814 Free PMC article. Review.
Worlds within worlds: evolution of the vertebrate gut microbiota.
Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI. Ley RE, et al. Among authors: knight r. Nat Rev Microbiol. 2008 Oct;6(10):776-88. doi: 10.1038/nrmicro1978. Nat Rev Microbiol. 2008. PMID: 18794915 Free PMC article. Review.
QIIME allows analysis of high-throughput community sequencing data.
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. Caporaso JG, et al. Among authors: knight r. Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. Nat Methods. 2010. PMID: 20383131 Free PMC article. No abstract available.
3,335 results