Sima J - Search Results

1

Cellular senescence induces replication stress with almost no affect on DNA replication timing.

Rivera-Mulia JC, Schwerer H, Besnard E, Desprat R, Trevilla-Garcia C, Sima J, Bensadoun P, Zouaoui A, Gilbert DM, Lemaitre JM. Rivera-Mulia JC, et al. Among authors: sima j. Cell Cycle. 2018;17(13):1667-1681. doi: 10.1080/15384101.2018.1491235. Epub 2018 Aug 21. Cell Cycle. 2018. PMID: 29963964 Free PMC article.

2

DNA replication timing alterations identify common markers between distinct progeroid diseases.

Rivera-Mulia JC, Desprat R, Trevilla-Garcia C, Cornacchia D, Schwerer H, Sasaki T, Sima J, Fells T, Studer L, Lemaitre JM, Gilbert DM. Rivera-Mulia JC, et al. Among authors: sima j. Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):E10972-E10980. doi: 10.1073/pnas.1711613114. Epub 2017 Dec 1. Proc Natl Acad Sci U S A. 2017. PMID: 29196523 Free PMC article.

3

Control of DNA replication timing in the 3D genome.

Marchal C, Sima J, Gilbert DM. Marchal C, et al. Among authors: sima j. Nat Rev Mol Cell Biol. 2019 Dec;20(12):721-737. doi: 10.1038/s41580-019-0162-y. Epub 2019 Sep 2. Nat Rev Mol Cell Biol. 2019. PMID: 31477886 Review.

4

Complex correlations: replication timing and mutational landscapes during cancer and genome evolution.

Sima J, Gilbert DM. Sima J, et al. Curr Opin Genet Dev. 2014 Apr;25:93-100. doi: 10.1016/j.gde.2013.11.022. Epub 2014 Mar 2. Curr Opin Genet Dev. 2014. PMID: 24598232 Free PMC article. Review.

5

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program.

Dileep V, Ay F, Sima J, Vera DL, Noble WS, Gilbert DM. Dileep V, et al. Among authors: sima j. Genome Res. 2015 Aug;25(8):1104-13. doi: 10.1101/gr.183699.114. Epub 2015 May 20. Genome Res. 2015. PMID: 25995270 Free PMC article.

6

Large-Scale Chromatin Structure-Function Relationships during the Cell Cycle and Development: Insights from Replication Timing.

Dileep V, Rivera-Mulia JC, Sima J, Gilbert DM. Dileep V, et al. Among authors: sima j. Cold Spring Harb Symp Quant Biol. 2015;80:53-63. doi: 10.1101/sqb.2015.80.027284. Epub 2015 Nov 20. Cold Spring Harb Symp Quant Biol. 2015. PMID: 26590169 Review.

7

Bacterial artificial chromosomes establish replication timing and sub-nuclear compartment de novo as extra-chromosomal vectors.

Sima J, Bartlett DA, Gordon MR, Gilbert DM. Sima J, et al. Nucleic Acids Res. 2018 Feb 28;46(4):1810-1820. doi: 10.1093/nar/gkx1265. Nucleic Acids Res. 2018. PMID: 29294101 Free PMC article.

8

Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq.

Marchal C, Sasaki T, Vera D, Wilson K, Sima J, Rivera-Mulia JC, Trevilla-García C, Nogues C, Nafie E, Gilbert DM. Marchal C, et al. Among authors: sima j. Nat Protoc. 2018 May;13(5):819-839. doi: 10.1038/nprot.2017.148. Epub 2018 Mar 29. Nat Protoc. 2018. PMID: 29599440 Free PMC article.

9

Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.

Sima J, Chakraborty A, Dileep V, Michalski M, Klein KN, Holcomb NP, Turner JL, Paulsen MT, Rivera-Mulia JC, Trevilla-Garcia C, Bartlett DA, Zhao PA, Washburn BK, Nora EP, Kraft K, Mundlos S, Bruneau BG, Ljungman M, Fraser P, Ay F, Gilbert DM. Sima J, et al. Cell. 2019 Feb 7;176(4):816-830.e18. doi: 10.1016/j.cell.2018.11.036. Epub 2018 Dec 27. Cell. 2019. PMID: 30595451 Free PMC article.

10

Many paths lead chromatin to the nuclear periphery.

Gordon MR, Pope BD, Sima J, Gilbert DM. Gordon MR, et al. Among authors: sima j. Bioessays. 2015 Aug;37(8):862-6. doi: 10.1002/bies.201500034. Epub 2015 Jun 8. Bioessays. 2015. PMID: 26060083 Free PMC article. Review.

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