Hemberg M - Search Results

1

Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis.

Georgakopoulos-Soares I, Morganella S, Jain N, Hemberg M, Nik-Zainal S. Georgakopoulos-Soares I, et al. Among authors: hemberg m. Genome Res. 2018 Sep;28(9):1264-1271. doi: 10.1101/gr.231688.117. Epub 2018 Aug 13. Genome Res. 2018. PMID: 30104284 Free PMC article.

2

Bridge over troubled transcripts.

Parada GE, Hemberg M. Parada GE, et al. Among authors: hemberg m. Nat Comput Sci. 2022 Mar;2(3):142-143. doi: 10.1038/s43588-022-00219-y. Nat Comput Sci. 2022. PMID: 38177442 No abstract available.

3

scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes.

Cha J, Yu J, Cho JW, Hemberg M, Lee I. Cha J, et al. Among authors: hemberg m. Nucleic Acids Res. 2023 Jan 25;51(2):e8. doi: 10.1093/nar/gkac1042. Nucleic Acids Res. 2023. PMID: 36350625 Free PMC article.

4

High-throughput functional comparison of promoter and enhancer activities.

Nguyen TA, Jones RD, Snavely AR, Pfenning AR, Kirchner R, Hemberg M, Gray JM. Nguyen TA, et al. Among authors: hemberg m. Genome Res. 2016 Aug;26(8):1023-33. doi: 10.1101/gr.204834.116. Epub 2016 Jun 16. Genome Res. 2016. PMID: 27311442 Free PMC article.

5

MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments.

Georgakopoulos-Soares I, Jain N, Gray JM, Hemberg M. Georgakopoulos-Soares I, et al. Among authors: hemberg m. Bioinformatics. 2017 Jan 1;33(1):137-138. doi: 10.1093/bioinformatics/btw584. Epub 2016 Sep 6. Bioinformatics. 2017. PMID: 27605100 Free PMC article.

6

Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci.

Amaral PP, Leonardi T, Han N, Viré E, Gascoigne DK, Arias-Carrasco R, Büscher M, Pandolfini L, Zhang A, Pluchino S, Maracaja-Coutinho V, Nakaya HI, Hemberg M, Shiekhattar R, Enright AJ, Kouzarides T. Amaral PP, et al. Among authors: hemberg m. Genome Biol. 2018 Mar 15;19(1):32. doi: 10.1186/s13059-018-1405-5. Genome Biol. 2018. PMID: 29540241 Free PMC article.

7

Transcription-coupled repair and mismatch repair contribute towards preserving genome integrity at mononucleotide repeat tracts.

Georgakopoulos-Soares I, Koh G, Momen SE, Jiricny J, Hemberg M, Nik-Zainal S. Georgakopoulos-Soares I, et al. Among authors: hemberg m. Nat Commun. 2020 Apr 24;11(1):1980. doi: 10.1038/s41467-020-15901-w. Nat Commun. 2020. PMID: 32332764 Free PMC article.

8

Asymmetron: a toolkit for the identification of strand asymmetry patterns in biological sequences.

Georgakopoulos-Soares I, Mouratidis I, Parada GE, Matharu N, Hemberg M, Ahituv N. Georgakopoulos-Soares I, et al. Among authors: hemberg m. Nucleic Acids Res. 2021 Jan 11;49(1):e4. doi: 10.1093/nar/gkaa1052. Nucleic Acids Res. 2021. PMID: 33211865 Free PMC article.

9

MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development.

Parada GE, Munita R, Georgakopoulos-Soares I, Fernandes HJR, Kedlian VR, Metzakopian E, Andres ME, Miska EA, Hemberg M. Parada GE, et al. Among authors: hemberg m. Genome Biol. 2021 Jan 22;22(1):43. doi: 10.1186/s13059-020-02246-2. Genome Biol. 2021. PMID: 33482885 Free PMC article.

10

Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution.

Georgakopoulos-Soares I, Yizhar-Barnea O, Mouratidis I, Hemberg M, Ahituv N. Georgakopoulos-Soares I, et al. Among authors: hemberg m. Genome Biol. 2021 Aug 25;22(1):245. doi: 10.1186/s13059-021-02459-z. Genome Biol. 2021. PMID: 34433494 Free PMC article.

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