Holt KE - Search Results

1

FastSpar: rapid and scalable correlation estimation for compositional data.

Watts SC, Ritchie SC, Inouye M, Holt KE. Watts SC, et al. Among authors: holt ke. Bioinformatics. 2019 Mar 15;35(6):1064-1066. doi: 10.1093/bioinformatics/bty734. Bioinformatics. 2019. PMID: 30169561 Free PMC article.

2

Design of multiple sequence alignment algorithms on parallel, distributed memory supercomputers.

Church PC, Goscinski A, Holt K, Inouye M, Ghoting A, Makarychev K, Reumann M. Church PC, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2011;2011:924-7. doi: 10.1109/IEMBS.2011.6090208. Annu Int Conf IEEE Eng Med Biol Soc. 2011. PMID: 22254462

3

Short read sequence typing (SRST): multi-locus sequence types from short reads.

Inouye M, Conway TC, Zobel J, Holt KE. Inouye M, et al. Among authors: holt ke. BMC Genomics. 2012 Jul 24;13:338. doi: 10.1186/1471-2164-13-338. BMC Genomics. 2012. PMID: 22827703 Free PMC article.

4

Elucidation of pathways driving asthma pathogenesis: development of a systems-level analytic strategy.

Walker ML, Holt KE, Anderson GP, Teo SM, Sly PD, Holt PG, Inouye M. Walker ML, et al. Among authors: holt pg, holt ke. Front Immunol. 2014 Sep 23;5:447. doi: 10.3389/fimmu.2014.00447. eCollection 2014. Front Immunol. 2014. PMID: 25295037 Free PMC article. Review.

5

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs.

Inouye M, Dashnow H, Raven LA, Schultz MB, Pope BJ, Tomita T, Zobel J, Holt KE. Inouye M, et al. Among authors: holt ke. Genome Med. 2014 Nov 20;6(11):90. doi: 10.1186/s13073-014-0090-6. eCollection 2014. Genome Med. 2014. PMID: 25422674 Free PMC article.

6

The infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development.

Teo SM, Mok D, Pham K, Kusel M, Serralha M, Troy N, Holt BJ, Hales BJ, Walker ML, Hollams E, Bochkov YA, Grindle K, Johnston SL, Gern JE, Sly PD, Holt PG, Holt KE, Inouye M. Teo SM, et al. Among authors: holt bj, holt pg, holt ke. Cell Host Microbe. 2015 May 13;17(5):704-15. doi: 10.1016/j.chom.2015.03.008. Epub 2015 Apr 9. Cell Host Microbe. 2015. PMID: 25865368 Free PMC article.

7

Bandage: interactive visualization of de novo genome assemblies.

Wick RR, Schultz MB, Zobel J, Holt KE. Wick RR, et al. Among authors: holt ke. Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22. Bioinformatics. 2015. PMID: 26099265 Free PMC article.

8

A Scalable Permutation Approach Reveals Replication and Preservation Patterns of Network Modules in Large Datasets.

Ritchie SC, Watts S, Fearnley LG, Holt KE, Abraham G, Inouye M. Ritchie SC, et al. Among authors: holt ke. Cell Syst. 2016 Jul;3(1):71-82. doi: 10.1016/j.cels.2016.06.012. Cell Syst. 2016. PMID: 27467248 Free article.

9

Vitamin D over the first decade and susceptibility to childhood allergy and asthma.

Hollams EM, Teo SM, Kusel M, Holt BJ, Holt KE, Inouye M, De Klerk NH, Zhang G, Sly PD, Hart PH, Holt PG. Hollams EM, et al. Among authors: holt bj, holt pg, holt ke. J Allergy Clin Immunol. 2017 Feb;139(2):472-481.e9. doi: 10.1016/j.jaci.2016.07.032. Epub 2016 Oct 7. J Allergy Clin Immunol. 2017. PMID: 27726947

10

In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages.

Ingle DJ, Valcanis M, Kuzevski A, Tauschek M, Inouye M, Stinear T, Levine MM, Robins-Browne RM, Holt KE. Ingle DJ, et al. Among authors: holt ke. Microb Genom. 2016 Jul 11;2(7):e000064. doi: 10.1099/mgen.0.000064. eCollection 2016 Jul. Microb Genom. 2016. PMID: 28348859 Free PMC article.

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