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A naturally protective epitope of limited variability as an influenza vaccine target.
Thompson CP, Lourenço J, Walters AA, Obolski U, Edmans M, Palmer DS, Kooblall K, Carnell GW, O'Connor D, Bowden TA, Pybus OG, Pollard AJ, Temperton NJ, Lambe T, Gilbert SC, Gupta S. Thompson CP, et al. Among authors: gupta s. Nat Commun. 2018 Sep 21;9(1):3859. doi: 10.1038/s41467-018-06228-8. Nat Commun. 2018. PMID: 30242149 Free PMC article.
The epidemic behavior of the hepatitis C virus.
Pybus OG, Charleston MA, Gupta S, Rambaut A, Holmes EC, Harvey PH. Pybus OG, et al. Among authors: gupta s. Science. 2001 Jun 22;292(5525):2323-5. doi: 10.1126/science.1058321. Science. 2001. PMID: 11423661
The antigenic evolution of influenza: drift or thrift?
Wikramaratna PS, Sandeman M, Recker M, Gupta S. Wikramaratna PS, et al. Among authors: gupta s. Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120200. doi: 10.1098/rstb.2012.0200. Print 2013 Mar 19. Philos Trans R Soc Lond B Biol Sci. 2013. PMID: 23382423 Free PMC article.
MANTIS: an R package that simulates multilocus models of pathogen evolution.
Lourenço J, Wikramaratna PS, Gupta S. Lourenço J, et al. Among authors: gupta s. BMC Bioinformatics. 2015 May 28;16:176. doi: 10.1186/s12859-015-0598-9. BMC Bioinformatics. 2015. PMID: 26017358 Free PMC article.
MANTIS can simulate and analyse epidemiological time-series generated under the biological assumptions of the strain theory of host-pathogen systems by Gupta et al. CONCLUSIONS: MANTIS wraps a C/C++ ordinary-differential equations system and Runge-Kutta solver into a set o …
MANTIS can simulate and analyse epidemiological time-series generated under the biological assumptions of the strain theory of host-pathogen …
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