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A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains.
Salhab A, Nordström K, Gasparoni G, Kattler K, Ebert P, Ramirez F, Arrigoni L, Müller F, Polansky JK, Cadenas C, G Hengstler J, Lengauer T, Manke T; DEEP Consortium; Walter J. Salhab A, et al. Among authors: ramirez f. Genome Biol. 2018 Sep 28;19(1):150. doi: 10.1186/s13059-018-1510-5. Genome Biol. 2018. PMID: 30266094 Free PMC article.
RELACS nuclei barcoding enables high-throughput ChIP-seq.
Arrigoni L, Al-Hasani H, Ramírez F, Panzeri I, Ryan DP, Santacruz D, Kress N, Pospisilik JA, Bönisch U, Manke T. Arrigoni L, et al. Among authors: ramirez f. Commun Biol. 2018 Dec 5;1:214. doi: 10.1038/s42003-018-0219-z. eCollection 2018. Commun Biol. 2018. PMID: 30534606 Free PMC article.
Suv39h-dependent H3K9me3 marks intact retrotransposons and silences LINE elements in mouse embryonic stem cells.
Bulut-Karslioglu A, De La Rosa-Velázquez IA, Ramirez F, Barenboim M, Onishi-Seebacher M, Arand J, Galán C, Winter GE, Engist B, Gerle B, O'Sullivan RJ, Martens JH, Walter J, Manke T, Lachner M, Jenuwein T. Bulut-Karslioglu A, et al. Among authors: ramirez f. Mol Cell. 2014 Jul 17;55(2):277-90. doi: 10.1016/j.molcel.2014.05.029. Epub 2014 Jun 26. Mol Cell. 2014. PMID: 24981170 Free article.
Computing topological parameters of biological networks.
Assenov Y, Ramírez F, Schelhorn SE, Lengauer T, Albrecht M. Assenov Y, et al. Among authors: ramirez f. Bioinformatics. 2008 Jan 15;24(2):282-4. doi: 10.1093/bioinformatics/btm554. Epub 2007 Nov 15. Bioinformatics. 2008. PMID: 18006545
pyGenomeTracks: reproducible plots for multivariate genomic datasets.
Lopez-Delisle L, Rabbani L, Wolff J, Bhardwaj V, Backofen R, Grüning B, Ramírez F, Manke T. Lopez-Delisle L, et al. Among authors: ramirez f. Bioinformatics. 2021 Apr 20;37(3):422-423. doi: 10.1093/bioinformatics/btaa692. Bioinformatics. 2021. PMID: 32745185 Free PMC article.
1,074 results