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Integrating omics datasets with the OmicsPLS package.
Bouhaddani SE, Uh HW, Jongbloed G, Hayward C, Klarić L, Kiełbasa SM, Houwing-Duistermaat J. Bouhaddani SE, et al. Among authors: kielbasa sm. BMC Bioinformatics. 2018 Oct 11;19(1):371. doi: 10.1186/s12859-018-2371-3. BMC Bioinformatics. 2018. PMID: 30309317 Free PMC article.
Single-cell immune profiling reveals thymus-seeding populations, T cell commitment, and multilineage development in the human thymus.
Cordes M, Canté-Barrett K, van den Akker EB, Moretti FA, Kiełbasa SM, Vloemans SA, Garcia-Perez L, Teodosio C, van Dongen JJM, Pike-Overzet K, Reinders MJT, Staal FJT. Cordes M, et al. Among authors: kielbasa sm. Sci Immunol. 2022 Nov 18;7(77):eade0182. doi: 10.1126/sciimmunol.ade0182. Epub 2022 Nov 11. Sci Immunol. 2022. PMID: 36367948
RNA-Seq in 296 phased trios provides a high-resolution map of genomic imprinting.
Jadhav B, Monajemi R, Gagalova KK, Ho D, Draisma HHM, van de Wiel MA, Franke L, Heijmans BT, van Meurs J, Jansen R; GoNL Consortium; BIOS Consortium; 't Hoen PAC, Sharp AJ, Kiełbasa SM. Jadhav B, et al. Among authors: kielbasa sm. BMC Biol. 2019 Jun 24;17(1):50. doi: 10.1186/s12915-019-0674-0. BMC Biol. 2019. PMID: 31234833 Free PMC article.
Eleven grand challenges in single-cell data science.
Lähnemann D, Köster J, Szczurek E, McCarthy DJ, Hicks SC, Robinson MD, Vallejos CA, Campbell KR, Beerenwinkel N, Mahfouz A, Pinello L, Skums P, Stamatakis A, Attolini CS, Aparicio S, Baaijens J, Balvert M, Barbanson B, Cappuccio A, Corleone G, Dutilh BE, Florescu M, Guryev V, Holmer R, Jahn K, Lobo TJ, Keizer EM, Khatri I, Kielbasa SM, Korbel JO, Kozlov AM, Kuo TH, Lelieveldt BPF, Mandoiu II, Marioni JC, Marschall T, Mölder F, Niknejad A, Rączkowska A, Reinders M, Ridder J, Saliba AE, Somarakis A, Stegle O, Theis FJ, Yang H, Zelikovsky A, McHardy AC, Raphael BJ, Shah SP, Schönhuth A. Lähnemann D, et al. Among authors: kielbasa sm. Genome Biol. 2020 Feb 7;21(1):31. doi: 10.1186/s13059-020-1926-6. Genome Biol. 2020. PMID: 32033589 Free PMC article. Review.
Brain Transcriptomic Analysis of Hereditary Cerebral Hemorrhage With Amyloidosis-Dutch Type.
Grand Moursel L, van Roon-Mom WMC, Kiełbasa SM, Mei H, Buermans HPJ, van der Graaf LM, Hettne KM, de Meijer EJ, van Duinen SG, Laros JFJ, van Buchem MA, 't Hoen PAC, van der Maarel SM, van der Weerd L. Grand Moursel L, et al. Among authors: kielbasa sm. Front Aging Neurosci. 2018 Apr 13;10:102. doi: 10.3389/fnagi.2018.00102. eCollection 2018. Front Aging Neurosci. 2018. PMID: 29706885 Free PMC article.
Transcriptional profiling and biomarker identification reveal tissue specific effects of expanded ataxin-3 in a spinocerebellar ataxia type 3 mouse model.
Toonen LJA, Overzier M, Evers MM, Leon LG, van der Zeeuw SAJ, Mei H, Kielbasa SM, Goeman JJ, Hettne KM, Magnusson OT, Poirel M, Seyer A, 't Hoen PAC, van Roon-Mom WMC. Toonen LJA, et al. Among authors: kielbasa sm. Mol Neurodegener. 2018 Jun 22;13(1):31. doi: 10.1186/s13024-018-0261-9. Mol Neurodegener. 2018. PMID: 29929540 Free PMC article.
Adaptive seeds tame genomic sequence comparison.
Kiełbasa SM, Wan R, Sato K, Horton P, Frith MC. Kiełbasa SM, et al. Genome Res. 2011 Mar;21(3):487-93. doi: 10.1101/gr.113985.110. Epub 2011 Jan 5. Genome Res. 2011. PMID: 21209072 Free PMC article.
96 results