Galardini M - Search Results

1

pyseer: a comprehensive tool for microbial pangenome-wide association studies.

Lees JA, Galardini M, Bentley SD, Weiser JN, Corander J. Lees JA, et al. Among authors: galardini m. Bioinformatics. 2018 Dec 15;34(24):4310-4312. doi: 10.1093/bioinformatics/bty539. Bioinformatics. 2018. PMID: 30535304 Free PMC article.

2

Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions.

Lees JA, Mai TT, Galardini M, Wheeler NE, Horsfield ST, Parkhill J, Corander J. Lees JA, et al. Among authors: galardini m. mBio. 2020 Jul 7;11(4):e01344-20. doi: 10.1128/mBio.01344-20. mBio. 2020. PMID: 32636251 Free PMC article.

3

MeDuSa: a multi-draft based scaffolder.

Bosi E, Donati B, Galardini M, Brunetti S, Sagot MF, Lió P, Crescenzi P, Fani R, Fondi M. Bosi E, et al. Among authors: galardini m. Bioinformatics. 2015 Aug 1;31(15):2443-51. doi: 10.1093/bioinformatics/btv171. Epub 2015 Mar 25. Bioinformatics. 2015. PMID: 25810435

4

From pangenome to panphenome and back.

Galardini M, Mengoni A, Mocali S. Galardini M, et al. Methods Mol Biol. 2015;1231:257-70. doi: 10.1007/978-1-4939-1720-4_16. Methods Mol Biol. 2015. PMID: 25343870

5

A resource of variant effect predictions of single nucleotide variants in model organisms.

Wagih O, Galardini M, Busby BP, Memon D, Typas A, Beltrao P. Wagih O, et al. Among authors: galardini m. Mol Syst Biol. 2018 Dec 20;14(12):e8430. doi: 10.15252/msb.20188430. Mol Syst Biol. 2018. PMID: 30573687 Free PMC article.

6

The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae.

Galardini M, Busby BP, Vieitez C, Dunham AS, Typas A, Beltrao P. Galardini M, et al. Mol Syst Biol. 2019 Dec;15(12):e8831. doi: 10.15252/msb.20198831. Mol Syst Biol. 2019. PMID: 31885205 Free PMC article.

7

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies.

Tramontano M, Andrejev S, Pruteanu M, Klünemann M, Kuhn M, Galardini M, Jouhten P, Zelezniak A, Zeller G, Bork P, Typas A, Patil KR. Tramontano M, et al. Among authors: galardini m. Nat Microbiol. 2018 Apr;3(4):514-522. doi: 10.1038/s41564-018-0123-9. Epub 2018 Mar 19. Nat Microbiol. 2018. PMID: 29556107

8

COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.

Moretto M, Sonego P, Dierckxsens N, Brilli M, Bianco L, Ledezma-Tejeida D, Gama-Castro S, Galardini M, Romualdi C, Laukens K, Collado-Vides J, Meysman P, Engelen K. Moretto M, et al. Among authors: galardini m. Nucleic Acids Res. 2016 Jan 4;44(D1):D620-3. doi: 10.1093/nar/gkv1251. Epub 2015 Nov 19. Nucleic Acids Res. 2016. PMID: 26586805 Free PMC article.

9

Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study.

Galardini M, Clermont O, Baron A, Busby B, Dion S, Schubert S, Beltrao P, Denamur E. Galardini M, et al. PLoS Genet. 2020 Oct 28;16(10):e1009065. doi: 10.1371/journal.pgen.1009065. eCollection 2020 Oct. PLoS Genet. 2020. PMID: 33112851 Free PMC article.

10

Enly: Improving Draft Genomes through Reads Recycling.

Fondi M, Orlandini V, Corti G, Severgnini M, Galardini M, Pietrelli A, Fuligni F, Iacono M, Rizzi E, De Bellis G, Fani R. Fondi M, et al. Among authors: galardini m. J Genomics. 2014 Apr 5;2:89-93. doi: 10.7150/jgen.7298. eCollection 2014. J Genomics. 2014. PMID: 25031660 Free PMC article.

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