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Nucleotide Excision Repair and Impact of Site-Specific 5',8-Cyclopurine and Bulky DNA Lesions on the Physical Properties of Nucleosomes.
Shafirovich V, Kolbanovskiy M, Kropachev K, Liu Z, Cai Y, Terzidis MA, Masi A, Chatgilialoglu C, Amin S, Dadali A, Broyde S, Geacintov NE. Shafirovich V, et al. Among authors: kropachev k. Biochemistry. 2019 Feb 12;58(6):561-574. doi: 10.1021/acs.biochem.8b01066. Epub 2019 Jan 7. Biochemistry. 2019. PMID: 30570250 Free PMC article.
The sequence dependence of human nucleotide excision repair efficiencies of benzo[a]pyrene-derived DNA lesions: insights into the structural factors that favor dual incisions.
Kropachev K, Kolbanovskii M, Cai Y, Rodríguez F, Kolbanovskii A, Liu Y, Zhang L, Amin S, Patel D, Broyde S, Geacintov NE. Kropachev K, et al. J Mol Biol. 2009 Mar 13;386(5):1193-203. doi: 10.1016/j.jmb.2008.12.082. Epub 2009 Jan 8. J Mol Biol. 2009. PMID: 19162041 Free PMC article.
Inefficient nucleotide excision repair in human cell extracts of the N-(deoxyguanosin-8-yl)-6-aminochrysene and 5-(deoxyguanosin-N(2)-yl)-6-aminochrysene adducts derived from 6-nitrochrysene.
Krzeminski J, Kropachev K, Kolbanovskiy M, Reeves D, Kolbanovskiy A, Yun BH, Geacintov NE, Amin S, El-Bayoumy K. Krzeminski J, et al. Among authors: kropachev k. Chem Res Toxicol. 2011 Jan 14;24(1):65-72. doi: 10.1021/tx100284h. Epub 2010 Nov 29. Chem Res Toxicol. 2011. PMID: 21114286 Free PMC article.
Probing for DNA damage with β-hairpins: similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro.
Liu Y, Reeves D, Kropachev K, Cai Y, Ding S, Kolbanovskiy M, Kolbanovskiy A, Bolton JL, Broyde S, Van Houten B, Geacintov NE. Liu Y, et al. Among authors: kropachev k. DNA Repair (Amst). 2011 Jul 15;10(7):684-96. doi: 10.1016/j.dnarep.2011.04.020. Epub 2011 Jul 8. DNA Repair (Amst). 2011. PMID: 21741328 Free PMC article.
Resistance of bulky DNA lesions to nucleotide excision repair can result from extensive aromatic lesion-base stacking interactions.
Reeves DA, Mu H, Kropachev K, Cai Y, Ding S, Kolbanovskiy A, Kolbanovskiy M, Chen Y, Krzeminski J, Amin S, Patel DJ, Broyde S, Geacintov NE. Reeves DA, et al. Among authors: kropachev k. Nucleic Acids Res. 2011 Nov 1;39(20):8752-64. doi: 10.1093/nar/gkr537. Epub 2011 Jul 15. Nucleic Acids Res. 2011. PMID: 21764772 Free PMC article.
Nucleotide excision repair of 2-acetylaminofluorene- and 2-aminofluorene-(C8)-guanine adducts: molecular dynamics simulations elucidate how lesion structure and base sequence context impact repair efficiencies.
Mu H, Kropachev K, Wang L, Zhang L, Kolbanovskiy A, Kolbanovskiy M, Geacintov NE, Broyde S. Mu H, et al. Among authors: kropachev k. Nucleic Acids Res. 2012 Oct;40(19):9675-90. doi: 10.1093/nar/gks788. Epub 2012 Aug 16. Nucleic Acids Res. 2012. PMID: 22904073 Free PMC article.
34 results