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Influenza virus sequence feature variant type analysis: evidence of a role for NS1 in influenza virus host range restriction.
Noronha JM, Liu M, Squires RB, Pickett BE, Hale BG, Air GM, Galloway SE, Takimoto T, Schmolke M, Hunt V, Klem E, García-Sastre A, McGee M, Scheuermann RH. Noronha JM, et al. Among authors: scheuermann rh. J Virol. 2012 May;86(10):5857-66. doi: 10.1128/JVI.06901-11. Epub 2012 Mar 7. J Virol. 2012. PMID: 22398283 Free PMC article.
Metadata-driven comparative analysis tool for sequences (meta-CATS): an automated process for identifying significant sequence variations that correlate with virus attributes.
Pickett BE, Liu M, Sadat EL, Squires RB, Noronha JM, He S, Jen W, Zaremba S, Gu Z, Zhou L, Larsen CN, Bosch I, Gehrke L, McGee M, Klem EB, Scheuermann RH. Pickett BE, et al. Among authors: scheuermann rh. Virology. 2013 Dec;447(1-2):45-51. doi: 10.1016/j.virol.2013.08.021. Epub 2013 Sep 14. Virology. 2013. PMID: 24210098 Free PMC article.
Influenza Research Database: An integrated bioinformatics resource for influenza virus research.
Zhang Y, Aevermann BD, Anderson TK, Burke DF, Dauphin G, Gu Z, He S, Kumar S, Larsen CN, Lee AJ, Li X, Macken C, Mahaffey C, Pickett BE, Reardon B, Smith T, Stewart L, Suloway C, Sun G, Tong L, Vincent AL, Walters B, Zaremba S, Zhao H, Zhou L, Zmasek C, Klem EB, Scheuermann RH. Zhang Y, et al. Among authors: scheuermann rh. Nucleic Acids Res. 2017 Jan 4;45(D1):D466-D474. doi: 10.1093/nar/gkw857. Epub 2016 Sep 26. Nucleic Acids Res. 2017. PMID: 27679478 Free PMC article.
Genomic evolution of the Coronaviridae family.
Zmasek CM, Lefkowitz EJ, Niewiadomska A, Scheuermann RH. Zmasek CM, et al. Among authors: scheuermann rh. Virology. 2022 May;570:123-133. doi: 10.1016/j.virol.2022.03.005. Epub 2022 Mar 30. Virology. 2022. PMID: 35398776 Free PMC article.
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.
Olson RD, Assaf R, Brettin T, Conrad N, Cucinell C, Davis JJ, Dempsey DM, Dickerman A, Dietrich EM, Kenyon RW, Kuscuoglu M, Lefkowitz EJ, Lu J, Machi D, Macken C, Mao C, Niewiadomska A, Nguyen M, Olsen GJ, Overbeek JC, Parrello B, Parrello V, Porter JS, Pusch GD, Shukla M, Singh I, Stewart L, Tan G, Thomas C, VanOeffelen M, Vonstein V, Wallace ZS, Warren AS, Wattam AR, Xia F, Yoo H, Zhang Y, Zmasek CM, Scheuermann RH, Stevens RL. Olson RD, et al. Among authors: scheuermann rh. Nucleic Acids Res. 2023 Jan 6;51(D1):D678-D689. doi: 10.1093/nar/gkac1003. Nucleic Acids Res. 2023. PMID: 36350631 Free PMC article.
204 results