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Fast and flexible bacterial genomic epidemiology with PopPUNK.
Lees JA, Harris SR, Tonkin-Hill G, Gladstone RA, Lo SW, Weiser JN, Corander J, Bentley SD, Croucher NJ. Lees JA, et al. Among authors: bentley sd. Genome Res. 2019 Feb;29(2):304-316. doi: 10.1101/gr.241455.118. Epub 2019 Jan 24. Genome Res. 2019. PMID: 30679308 Free PMC article.
Fitting the niche by genomic adaptation.
Thomson N, Bentley S, Holden M, Parkhill J. Thomson N, et al. Nat Rev Microbiol. 2003 Nov;1(2):92-3. doi: 10.1038/nrmicro756. Nat Rev Microbiol. 2003. PMID: 15035037
Comparative genomic structure of prokaryotes.
Bentley SD, Parkhill J. Bentley SD, et al. Annu Rev Genet. 2004;38:771-92. doi: 10.1146/annurev.genet.38.072902.094318. Annu Rev Genet. 2004. PMID: 15568993 Review.
The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation.
Thomson NR, Yeats C, Bell K, Holden MT, Bentley SD, Livingstone M, Cerdeño-Tárraga AM, Harris B, Doggett J, Ormond D, Mungall K, Clarke K, Feltwell T, Hance Z, Sanders M, Quail MA, Price C, Barrell BG, Parkhill J, Longbottom D. Thomson NR, et al. Among authors: bentley sd. Genome Res. 2005 May;15(5):629-40. doi: 10.1101/gr.3684805. Epub 2005 Apr 18. Genome Res. 2005. PMID: 15837807 Free PMC article.
Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes.
Sebaihia M, Peck MW, Minton NP, Thomson NR, Holden MT, Mitchell WJ, Carter AT, Bentley SD, Mason DR, Crossman L, Paul CJ, Ivens A, Wells-Bennik MH, Davis IJ, Cerdeño-Tárraga AM, Churcher C, Quail MA, Chillingworth T, Feltwell T, Fraser A, Goodhead I, Hance Z, Jagels K, Larke N, Maddison M, Moule S, Mungall K, Norbertczak H, Rabbinowitsch E, Sanders M, Simmonds M, White B, Whithead S, Parkhill J. Sebaihia M, et al. Among authors: bentley sd. Genome Res. 2007 Jul;17(7):1082-92. doi: 10.1101/gr.6282807. Epub 2007 May 22. Genome Res. 2007. PMID: 17519437 Free PMC article.
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.
Silby MW, Cerdeño-Tárraga AM, Vernikos GS, Giddens SR, Jackson RW, Preston GM, Zhang XX, Moon CD, Gehrig SM, Godfrey SA, Knight CG, Malone JG, Robinson Z, Spiers AJ, Harris S, Challis GL, Yaxley AM, Harris D, Seeger K, Murphy L, Rutter S, Squares R, Quail MA, Saunders E, Mavromatis K, Brettin TS, Bentley SD, Hothersall J, Stephens E, Thomas CM, Parkhill J, Levy SB, Rainey PB, Thomson NR. Silby MW, et al. Among authors: bentley sd. Genome Biol. 2009;10(5):R51. doi: 10.1186/gb-2009-10-5-r51. Epub 2009 May 11. Genome Biol. 2009. PMID: 19432983 Free PMC article.
Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis.
Holden MT, Hauser H, Sanders M, Ngo TH, Cherevach I, Cronin A, Goodhead I, Mungall K, Quail MA, Price C, Rabbinowitsch E, Sharp S, Croucher NJ, Chieu TB, Mai NT, Diep TS, Chinh NT, Kehoe M, Leigh JA, Ward PN, Dowson CG, Whatmore AM, Chanter N, Iversen P, Gottschalk M, Slater JD, Smith HE, Spratt BG, Xu J, Ye C, Bentley S, Barrell BG, Schultsz C, Maskell DJ, Parkhill J. Holden MT, et al. PLoS One. 2009 Jul 15;4(7):e6072. doi: 10.1371/journal.pone.0006072. PLoS One. 2009. PMID: 19603075 Free PMC article.
A simple method for directional transcriptome sequencing using Illumina technology.
Croucher NJ, Fookes MC, Perkins TT, Turner DJ, Marguerat SB, Keane T, Quail MA, He M, Assefa S, Bähler J, Kingsley RA, Parkhill J, Bentley SD, Dougan G, Thomson NR. Croucher NJ, et al. Among authors: bentley sd. Nucleic Acids Res. 2009 Dec;37(22):e148. doi: 10.1093/nar/gkp811. Nucleic Acids Res. 2009. PMID: 19815668 Free PMC article.
365 results