Musen MA - Search Results

1

The variable quality of metadata about biological samples used in biomedical experiments.

Gonçalves RS, Musen MA. Gonçalves RS, et al. Among authors: musen ma. Sci Data. 2019 Feb 19;6:190021. doi: 10.1038/sdata.2019.21. Sci Data. 2019. PMID: 30778255 Free PMC article.

2

An ontology-driven tool for structured data acquisition using Web forms.

Gonçalves RS, Tu SW, Nyulas CI, Tierney MJ, Musen MA. Gonçalves RS, et al. Among authors: musen ma. J Biomed Semantics. 2017 Aug 1;8(1):26. doi: 10.1186/s13326-017-0133-1. J Biomed Semantics. 2017. PMID: 28764813 Free PMC article.

3

Precision annotation of digital samples in NCBI's gene expression omnibus.

Hadley D, Pan J, El-Sayed O, Aljabban J, Aljabban I, Azad TD, Hadied MO, Raza S, Rayikanti BA, Chen B, Paik H, Aran D, Spatz J, Himmelstein D, Panahiazar M, Bhattacharya S, Sirota M, Musen MA, Butte AJ. Hadley D, et al. Among authors: musen ma. Sci Data. 2017 Sep 19;4:170125. doi: 10.1038/sdata.2017.125. Sci Data. 2017. PMID: 28925997 Free PMC article.

4

Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations.

Martínez-Romero M, O'Connor MJ, Shankar RD, Panahiazar M, Willrett D, Egyedi AL, Gevaert O, Graybeal J, Musen MA. Martínez-Romero M, et al. Among authors: musen ma. AMIA Annu Symp Proc. 2018 Apr 16;2017:1272-1281. eCollection 2017. AMIA Annu Symp Proc. 2018. PMID: 29854196 Free PMC article.

5

CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata.

Bukhari SAC, Martínez-Romero M, O' Connor MJ, Egyedi AL, Willrett D, Graybeal J, Musen MA, Cheung KH, Kleinstein SH. Bukhari SAC, et al. Among authors: musen ma. BMC Bioinformatics. 2018 Jul 16;19(1):268. doi: 10.1186/s12859-018-2247-6. BMC Bioinformatics. 2018. PMID: 30012108 Free PMC article.

6

Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases.

Martínez-Romero M, O'Connor MJ, Egyedi AL, Willrett D, Hardi J, Graybeal J, Musen MA. Martínez-Romero M, et al. Among authors: musen ma. Database (Oxford). 2019 Jan 1;2019:baz059. doi: 10.1093/database/baz059. Database (Oxford). 2019. PMID: 31210270 Free PMC article.

7

The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments.

Gonçalves RS, O'Connor MJ, Martínez-Romero M, Egyedi AL, Willrett D, Graybeal J, Musen MA. Gonçalves RS, et al. Among authors: musen ma. Semant Web ISWC. 2017 Oct;10588:103-110. doi: 10.1007/978-3-319-68204-4_10. Epub 2017 Oct 4. Semant Web ISWC. 2017. PMID: 32219223 Free PMC article.

8

Obstacles to the reuse of study metadata in ClinicalTrials.gov.

Miron L, Gonçalves RS, Musen MA. Miron L, et al. Among authors: musen ma. Sci Data. 2020 Dec 18;7(1):443. doi: 10.1038/s41597-020-00780-z. Sci Data. 2020. PMID: 33339830 Free PMC article.

9

An empirical meta-analysis of the life sciences linked open data on the web.

Kamdar MR, Musen MA. Kamdar MR, et al. Among authors: musen ma. Sci Data. 2021 Jan 21;8(1):24. doi: 10.1038/s41597-021-00797-y. Sci Data. 2021. PMID: 33479214 Free PMC article.

10

Modeling community standards for metadata as templates makes data FAIR.

Musen MA, O'Connor MJ, Schultes E, Martínez-Romero M, Hardi J, Graybeal J. Musen MA, et al. Sci Data. 2022 Nov 12;9(1):696. doi: 10.1038/s41597-022-01815-3. Sci Data. 2022. PMID: 36371407 Free PMC article.

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