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Relative Abundance of Transcripts ( RATs): Identifying differential isoform abundance from RNA-seq.
F1000Res. 2019 Feb 24;8:213. doi: 10.12688/f1000research.17916.1. eCollection 2019.
F1000Res. 2019.
PMID: 30906538
Free PMC article.
How well do RNA-Seq differential gene expression tools perform in a complex eukaryote? A case study in Arabidopsis thaliana.
Froussios K, Schurch NJ, Mackinnon K, Gierliński M, Duc C, Simpson GG, Barton GJ.
Froussios K, et al.
Bioinformatics. 2019 Sep 15;35(18):3372-3377. doi: 10.1093/bioinformatics/btz089.
Bioinformatics. 2019.
PMID: 30726870
Free PMC article.
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SPOP targets the immune transcription factor IRF1 for proteasomal degradation.
Schwartz I, Vunjak M, Budroni V, Cantoran García A, Mastrovito M, Soderholm A, Hinterndorfer M, de Almeida M, Hacker K, Wang J, Froussios K, Jude J, Decker T, Zuber J, Versteeg GA.
Schwartz I, et al. Among authors: froussios k.
Elife. 2023 Aug 25;12:e89951. doi: 10.7554/eLife.89951.
Elife. 2023.
PMID: 37622993
Free PMC article.
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HUWE1 controls tristetraprolin proteasomal degradation by regulating its phosphorylation.
Scinicariello S, Soderholm A, Schäfer M, Shulkina A, Schwartz I, Hacker K, Gogova R, Kalis R, Froussios K, Budroni V, Bestehorn A, Clausen T, Kovarik P, Zuber J, Versteeg GA.
Scinicariello S, et al. Among authors: froussios k.
Elife. 2023 Mar 24;12:e83159. doi: 10.7554/eLife.83159.
Elife. 2023.
PMID: 36961408
Free PMC article.
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Isolating live cell clones from barcoded populations using CRISPRa-inducible reporters.
Umkehrer C, Holstein F, Formenti L, Jude J, Froussios K, Neumann T, Cronin SM, Haas L, Lipp JJ, Burkard TR, Fellner M, Wiesner T, Zuber J, Obenauf AC.
Umkehrer C, et al. Among authors: froussios k.
Nat Biotechnol. 2021 Feb;39(2):174-178. doi: 10.1038/s41587-020-0614-0. Epub 2020 Jul 27.
Nat Biotechnol. 2021.
PMID: 32719478
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