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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie HA, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA, Wu CH, Xie D, Zhang C, Stadler T, Drummond AJ. Bouckaert R, et al. Among authors: duchene s. PLoS Comput Biol. 2019 Apr 8;15(4):e1006650. doi: 10.1371/journal.pcbi.1006650. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30958812 Free PMC article.
Phylodynamic signatures in the emergence of community-associated MRSA.
Steinig E, Aglua I, Duchene S, Meehan MT, Yoannes M, Firth C, Jaworski J, Drekore J, Urakoko B, Poka H, Wurr C, Ebos E, Nangen D, Müller E, Mulvey P, Jackson C, Blomfeldt A, Aamot HV, Laman M, Manning L, Earls M, Coleman DC, Greenhill A, Ford R, Stegger M, Syed MA, Jamil B, Monecke S, Ehricht R, Smith S, Pomat W, Horwood P, Tong SYC, McBryde E. Steinig E, et al. Among authors: duchene s. Proc Natl Acad Sci U S A. 2022 Nov 8;119(45):e2204993119. doi: 10.1073/pnas.2204993119. Epub 2022 Nov 2. Proc Natl Acad Sci U S A. 2022. PMID: 36322765 Free PMC article.
Genome-scale rates of evolutionary change in bacteria.
Duchêne S, Holt KE, Weill FX, Le Hello S, Hawkey J, Edwards DJ, Fourment M, Holmes EC. Duchêne S, et al. Microb Genom. 2016 Nov 30;2(11):e000094. doi: 10.1099/mgen.0.000094. eCollection 2016 Nov. Microb Genom. 2016. PMID: 28348834 Free PMC article.
Bayesian molecular dating: opening up the black box.
Bromham L, Duchêne S, Hua X, Ritchie AM, Duchêne DA, Ho SYW. Bromham L, et al. Among authors: duchene s, duchene da. Biol Rev Camb Philos Soc. 2018 May;93(2):1165-1191. doi: 10.1111/brv.12390. Epub 2017 Dec 15. Biol Rev Camb Philos Soc. 2018. PMID: 29243391 Review.
128 results