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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie HA, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA, Wu CH, Xie D, Zhang C, Stadler T, Drummond AJ. Bouckaert R, et al. Among authors: gavryushkina a. PLoS Comput Biol. 2019 Apr 8;15(4):e1006650. doi: 10.1371/journal.pcbi.1006650. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30958812 Free PMC article.
Recursive algorithms for phylogenetic tree counting.
Gavryushkina A, Welch D, Drummond AJ. Gavryushkina A, et al. Algorithms Mol Biol. 2013 Oct 28;8(1):26. doi: 10.1186/1748-7188-8-26. Algorithms Mol Biol. 2013. PMID: 24164709 Free PMC article.
Sources of HIV infection among men having sex with men and implications for prevention.
Ratmann O, van Sighem A, Bezemer D, Gavryushkina A, Jurriaans S, Wensing A, de Wolf F, Reiss P, Fraser C; ATHENA observational cohort. Ratmann O, et al. Among authors: gavryushkina a. Sci Transl Med. 2016 Jan 6;8(320):320ra2. doi: 10.1126/scitranslmed.aad1863. Sci Transl Med. 2016. PMID: 26738795 Free PMC article.