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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
PLoS Comput Biol. 2019 Apr 8;15(4):e1006650. doi: 10.1371/journal.pcbi.1006650. eCollection 2019 Apr.
PLoS Comput Biol. 2019.
PMID: 30958812
Free PMC article.
Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration.
Gavryushkina A, Welch D, Stadler T, Drummond AJ.
Gavryushkina A, et al.
PLoS Comput Biol. 2014 Dec 4;10(12):e1003919. doi: 10.1371/journal.pcbi.1003919. eCollection 2014 Dec.
PLoS Comput Biol. 2014.
PMID: 25474353
Free PMC article.
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Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins.
Gavryushkina A, Heath TA, Ksepka DT, Stadler T, Welch D, Drummond AJ.
Gavryushkina A, et al.
Syst Biol. 2017 Jan 1;66(1):57-73. doi: 10.1093/sysbio/syw060.
Syst Biol. 2017.
PMID: 28173531
Free PMC article.
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The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes.
Stadler T, Gavryushkina A, Warnock RCM, Drummond AJ, Heath TA.
Stadler T, et al. Among authors: gavryushkina a.
J Theor Biol. 2018 Jun 14;447:41-55. doi: 10.1016/j.jtbi.2018.03.005. Epub 2018 Mar 14.
J Theor Biol. 2018.
PMID: 29550451
Free PMC article.
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Closing the gap between palaeontological and neontological speciation and extinction rate estimates.
Silvestro D, Warnock RCM, Gavryushkina A, Stadler T.
Silvestro D, et al. Among authors: gavryushkina a.
Nat Commun. 2018 Dec 7;9(1):5237. doi: 10.1038/s41467-018-07622-y.
Nat Commun. 2018.
PMID: 30532040
Free PMC article.
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Recursive algorithms for phylogenetic tree counting.
Gavryushkina A, Welch D, Drummond AJ.
Gavryushkina A, et al.
Algorithms Mol Biol. 2013 Oct 28;8(1):26. doi: 10.1186/1748-7188-8-26.
Algorithms Mol Biol. 2013.
PMID: 24164709
Free PMC article.
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ncVarDB: a manually curated database for pathogenic non-coding variants and benign controls.
Biggs H, Parthasarathy P, Gavryushkina A, Gardner PP.
Biggs H, et al. Among authors: gavryushkina a.
Database (Oxford). 2020 Dec 1;2020:baaa105. doi: 10.1093/database/baaa105.
Database (Oxford). 2020.
PMID: 33258967
Free PMC article.
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Sources of HIV infection among men having sex with men and implications for prevention.
Ratmann O, van Sighem A, Bezemer D, Gavryushkina A, Jurriaans S, Wensing A, de Wolf F, Reiss P, Fraser C; ATHENA observational cohort.
Ratmann O, et al. Among authors: gavryushkina a.
Sci Transl Med. 2016 Jan 6;8(320):320ra2. doi: 10.1126/scitranslmed.aad1863.
Sci Transl Med. 2016.
PMID: 26738795
Free PMC article.
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