Hume DA - Search Results

1

Examining the Impact of Imputation Errors on Fine-Mapping Using DNA Methylation QTL as a Model Trait.

Chundru VK, Marioni RE, Prendergast JGD, Vallerga CL, Lin T, Beveridge AJ; SGPD Consortium; Gratten J, Hume DA, Deary IJ, Wray NR, Visscher PM, McRae AF. Chundru VK, et al. Among authors: hume da. Genetics. 2019 Jul;212(3):577-586. doi: 10.1534/genetics.118.301861. Epub 2019 Apr 30. Genetics. 2019. PMID: 31040117 Free PMC article.

2

Phenotypic and genetic variation in the response of chickens to Eimeria tenella induced coccidiosis.

Boulton K, Nolan MJ, Wu Z, Psifidi A, Riggio V, Harman K, Bishop SC, Kaiser P, Abrahamsen MS, Hawken R, Watson KA, Tomley FM, Blake DP, Hume DA. Boulton K, et al. Among authors: hume da. Genet Sel Evol. 2018 Nov 21;50(1):63. doi: 10.1186/s12711-018-0433-7. Genet Sel Evol. 2018. PMID: 30463512 Free PMC article.

3

Linked Mutations at Adjacent Nucleotides Have Shaped Human Population Differentiation and Protein Evolution.

Prendergast JGD, Pugh C, Harris SE, Hume DA, Deary IJ, Beveridge A. Prendergast JGD, et al. Among authors: hume da. Genome Biol Evol. 2019 Mar 1;11(3):759-775. doi: 10.1093/gbe/evz014. Genome Biol Evol. 2019. PMID: 30689878 Free PMC article.

4

Elimination of Reference Mapping Bias Reveals Robust Immune Related Allele-Specific Expression in Crossbred Sheep.

Salavati M, Bush SJ, Palma-Vera S, McCulloch MEB, Hume DA, Clark EL. Salavati M, et al. Among authors: hume da. Front Genet. 2019 Sep 19;10:863. doi: 10.3389/fgene.2019.00863. eCollection 2019. Front Genet. 2019. PMID: 31608110 Free PMC article.

5

Increased ultra-rare variant load in an isolated Scottish population impacts exonic and regulatory regions.

Halachev M, Meynert A, Taylor MS, Vitart V, Kerr SM, Klaric L; S. G. P. Consortium; Aitman TJ, Haley CS, Prendergast JG, Pugh C, Hume DA, Harris SE, Liewald DC, Deary IJ, Semple CA, Wilson JF. Halachev M, et al. Among authors: hume da. PLoS Genet. 2019 Nov 25;15(11):e1008480. doi: 10.1371/journal.pgen.1008480. eCollection 2019 Nov. PLoS Genet. 2019. PMID: 31765389 Free PMC article.

6

Analysis of the Progeny of Sibling Matings Reveals Regulatory Variation Impacting the Transcriptome of Immune Cells in Commercial Chickens.

Freem L, Summers KM, Gheyas AA, Psifidi A, Boulton K, MacCallum A, Harne R, O'Dell J, Bush SJ, Hume DA. Freem L, et al. Among authors: hume da. Front Genet. 2019 Nov 14;10:1032. doi: 10.3389/fgene.2019.01032. eCollection 2019. Front Genet. 2019. PMID: 31803225 Free PMC article.

7

Species-Specificity of Transcriptional Regulation and the Response to Lipopolysaccharide in Mammalian Macrophages.

Bush SJ, McCulloch MEB, Lisowski ZM, Muriuki C, Clark EL, Young R, Pridans C, Prendergast JGD, Summers KM, Hume DA. Bush SJ, et al. Among authors: hume da. Front Cell Dev Biol. 2020 Jul 21;8:661. doi: 10.3389/fcell.2020.00661. eCollection 2020. Front Cell Dev Biol. 2020. PMID: 32793601 Free PMC article.

8

Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication.

Dutta P, Talenti A, Young R, Jayaraman S, Callaby R, Jadhav SK, Dhanikachalam V, Manikandan M, Biswa BB, Low WY, Williams JL, Cook E, Toye P, Wall E, Djikeng A, Marshall K, Archibald AL, Gokhale S, Kumar S, Hume DA, Prendergast JGD. Dutta P, et al. Among authors: hume da. Nat Commun. 2020 Sep 21;11(1):4739. doi: 10.1038/s41467-020-18550-1. Nat Commun. 2020. PMID: 32958756 Free PMC article.

9

Whole-Genome Sequence Data Suggest Environmental Adaptation of Ethiopian Sheep Populations.

Wiener P, Robert C, Ahbara A, Salavati M, Abebe A, Kebede A, Wragg D, Friedrich J, Vasoya D, Hume DA, Djikeng A, Watson M, Prendergast JGD, Hanotte O, Mwacharo JM, Clark EL. Wiener P, et al. Among authors: hume da. Genome Biol Evol. 2021 Mar 1;13(3):evab014. doi: 10.1093/gbe/evab014. Genome Biol Evol. 2021. PMID: 33501931 Free PMC article.

10

Graphia: A platform for the graph-based visualisation and analysis of high dimensional data.

Freeman TC, Horsewell S, Patir A, Harling-Lee J, Regan T, Shih BB, Prendergast J, Hume DA, Angus T. Freeman TC, et al. Among authors: hume da. PLoS Comput Biol. 2022 Jul 25;18(7):e1010310. doi: 10.1371/journal.pcbi.1010310. eCollection 2022 Jul. PLoS Comput Biol. 2022. PMID: 35877685 Free PMC article.

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