Mangul S - Search Results

1

MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples.

LaPierre N, Mangul S, Alser M, Mandric I, Wu NC, Koslicki D, Eskin E. LaPierre N, et al. Among authors: mangul s. BMC Genomics. 2019 Jun 6;20(Suppl 5):423. doi: 10.1186/s12864-019-5699-9. BMC Genomics. 2019. PMID: 31167634 Free PMC article.

2

Accurate viral population assembly from ultra-deep sequencing data.

Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. Mangul S, et al. Bioinformatics. 2014 Jun 15;30(12):i329-37. doi: 10.1093/bioinformatics/btu295. Bioinformatics. 2014. PMID: 24932001 Free PMC article.

3

Transcriptome assembly and quantification from Ion Torrent RNA-Seq data.

Mangul S, Caciula A, Al Seesi S, Brinza D, Mӑndoiu I, Zelikovsky A. Mangul S, et al. BMC Genomics. 2014;15 Suppl 5(Suppl 5):S7. doi: 10.1186/1471-2164-15-S5-S7. Epub 2014 Jul 14. BMC Genomics. 2014. PMID: 25082147 Free PMC article.

4

Discovering Single Nucleotide Polymorphisms Regulating Human Gene Expression Using Allele Specific Expression from RNA-seq Data.

Kang EY, Martin LJ, Mangul S, Isvilanonda W, Zou J, Ben-David E, Han B, Lusis AJ, Shifman S, Eskin E. Kang EY, et al. Among authors: mangul s. Genetics. 2016 Nov;204(3):1057-1064. doi: 10.1534/genetics.115.177246. Epub 2016 Oct 7. Genetics. 2016. PMID: 27765809 Free PMC article.

5

Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants.

Artyomenko A, Wu NC, Mangul S, Eskin E, Sun R, Zelikovsky A. Artyomenko A, et al. Among authors: mangul s. J Comput Biol. 2017 Jun;24(6):558-570. doi: 10.1089/cmb.2016.0146. Epub 2016 Nov 30. J Comput Biol. 2017. PMID: 27901586 Free PMC article.

6

HapIso: An Accurate Method for the Haplotype- Specific Isoforms Reconstruction From Long Single-Molecule Reads.

Mangul S, Yang TH, Hormozdiari F, Dainis AM, Tseng E, Ashley EA, Zelikovsky A, Eskin E. Mangul S, et al. IEEE Trans Nanobioscience. 2017 Mar;16(2):108-115. doi: 10.1109/TNB.2017.2675981. Epub 2017 Mar 17. IEEE Trans Nanobioscience. 2017. PMID: 28328508

7

Addressing the Digital Divide in Contemporary Biology: Lessons from Teaching UNIX.

Mangul S, Martin LS, Hoffmann A, Pellegrini M, Eskin E. Mangul S, et al. Trends Biotechnol. 2017 Oct;35(10):901-903. doi: 10.1016/j.tibtech.2017.06.007. Epub 2017 Jul 15. Trends Biotechnol. 2017. PMID: 28720283

8

ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues.

Mangul S, Yang HT, Strauli N, Gruhl F, Porath HT, Hsieh K, Chen L, Daley T, Christenson S, Wesolowska-Andersen A, Spreafico R, Rios C, Eng C, Smith AD, Hernandez RD, Ophoff RA, Santana JR, Levanon EY, Woodruff PG, Burchard E, Seibold MA, Shifman S, Eskin E, Zaitlen N. Mangul S, et al. Genome Biol. 2018 Feb 15;19(1):36. doi: 10.1186/s13059-018-1403-7. Genome Biol. 2018. PMID: 29548336 Free PMC article.

9

Involving undergraduates in genomics research to narrow the education-research gap.

Mangul S, Martin LS, Eskin E. Mangul S, et al. Nat Biotechnol. 2018 Apr 5;36(4):369-371. doi: 10.1038/nbt.4113. Nat Biotechnol. 2018. PMID: 29621227 No abstract available.

10

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia.

Olde Loohuis LM, Mangul S, Ori APS, Jospin G, Koslicki D, Yang HT, Wu T, Boks MP, Lomen-Hoerth C, Wiedau-Pazos M, Cantor RM, de Vos WM, Kahn RS, Eskin E, Ophoff RA. Olde Loohuis LM, et al. Among authors: mangul s. Transl Psychiatry. 2018 May 10;8(1):96. doi: 10.1038/s41398-018-0107-9. Transl Psychiatry. 2018. PMID: 29743478 Free PMC article.

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