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OMA standalone: orthology inference among public and custom genomes and transcriptomes.
Altenhoff AM, Levy J, Zarowiecki M, Tomiczek B, Warwick Vesztrocy A, Dalquen DA, Müller S, Telford MJ, Glover NM, Dylus D, Dessimoz C. Altenhoff AM, et al. Among authors: glover nm. Genome Res. 2019 Jul;29(7):1152-1163. doi: 10.1101/gr.243212.118. Epub 2019 Jun 24. Genome Res. 2019. PMID: 31235654 Free PMC article.
Homoeologs: What Are They and How Do We Infer Them?
Glover NM, Redestig H, Dessimoz C. Glover NM, et al. Trends Plant Sci. 2016 Jul;21(7):609-621. doi: 10.1016/j.tplants.2016.02.005. Epub 2016 Mar 22. Trends Plant Sci. 2016. PMID: 27021699 Free PMC article. Review.
Gearing up to handle the mosaic nature of life in the quest for orthologs.
Forslund K, Pereira C, Capella-Gutierrez S, da Silva AS, Altenhoff A, Huerta-Cepas J, Muffato M, Patricio M, Vandepoele K, Ebersberger I, Blake J, Fernández Breis JT; Quest for Orthologs Consortium; Boeckmann B, Gabaldón T, Sonnhammer E, Dessimoz C, Lewis S; Quest for Orthologs Consortium. Forslund K, et al. Bioinformatics. 2018 Jan 15;34(2):323-329. doi: 10.1093/bioinformatics/btx542. Bioinformatics. 2018. PMID: 28968857 Free PMC article.
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.
Altenhoff AM, Glover NM, Train CM, Kaleb K, Warwick Vesztrocy A, Dylus D, de Farias TM, Zile K, Stevenson C, Long J, Redestig H, Gonnet GH, Dessimoz C. Altenhoff AM, et al. Among authors: glover nm. Nucleic Acids Res. 2018 Jan 4;46(D1):D477-D485. doi: 10.1093/nar/gkx1019. Nucleic Acids Res. 2018. PMID: 29106550 Free PMC article.
Advances and Applications in the Quest for Orthologs.
Glover N, Dessimoz C, Ebersberger I, Forslund SK, Gabaldón T, Huerta-Cepas J, Martin MJ, Muffato M, Patricio M, Pereira C, da Silva AS, Wang Y, Sonnhammer E, Thomas PD. Glover N, et al. Mol Biol Evol. 2019 Oct 1;36(10):2157-2164. doi: 10.1093/molbev/msz150. Mol Biol Evol. 2019. PMID: 31241141 Free PMC article.
Inferring Orthology and Paralogy.
Altenhoff AM, Glover NM, Dessimoz C. Altenhoff AM, et al. Among authors: glover nm. Methods Mol Biol. 2019;1910:149-175. doi: 10.1007/978-1-4939-9074-0_5. Methods Mol Biol. 2019. PMID: 31278664
Identifying orthologs with OMA: A primer.
Zahn-Zabal M, Dessimoz C, Glover NM. Zahn-Zabal M, et al. Among authors: glover nm. F1000Res. 2020 Jan 17;9:27. doi: 10.12688/f1000research.21508.1. eCollection 2020. F1000Res. 2020. PMID: 32089838 Free PMC article.
42 results