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Enhancer accessibility and CTCF occupancy underlie asymmetric TAD architecture and cell type specific genome topology.
Nat Commun. 2019 Jul 2;10(1):2908. doi: 10.1038/s41467-019-10725-9.
Nat Commun. 2019.
PMID: 31266948
Free PMC article.
Capturing Complex Enhancer Regulatory Hubs? Try Tri-C.
Varsally W, Hadjur S.
Varsally W, et al.
Dev Cell. 2018 Dec 3;47(5):543-544. doi: 10.1016/j.devcel.2018.11.021.
Dev Cell. 2018.
PMID: 30513299
Free article.
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A novel intergenic enhancer that regulates Bdnf expression in developing cortical neurons.
Brookes E, Martinez De La Cruz B, Boulasiki P, Au HYA, Varsally W, Barrington C, Hadjur S, Riccio A.
Brookes E, et al. Among authors: varsally w.
iScience. 2022 Dec 1;26(1):105695. doi: 10.1016/j.isci.2022.105695. eCollection 2023 Jan 20.
iScience. 2022.
PMID: 36582820
Free PMC article.
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Cohesin-independent STAG proteins interact with RNA and R-loops and promote complex loading.
Porter H, Li Y, Neguembor MV, Beltran M, Varsally W, Martin L, Cornejo MT, Pezić D, Bhamra A, Surinova S, Jenner RG, Cosma MP, Hadjur S.
Porter H, et al. Among authors: varsally w.
Elife. 2023 Apr 3;12:e79386. doi: 10.7554/eLife.79386.
Elife. 2023.
PMID: 37010886
Free PMC article.
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The N-terminus of Stag1 is required to repress the 2C program by maintaining rRNA expression and nucleolar integrity.
Pezic D, Weeks S, Varsally W, Dewari PS, Pollard S, Branco MR, Hadjur S.
Pezic D, et al. Among authors: varsally w.
Stem Cell Reports. 2023 Nov 14;18(11):2154-2173. doi: 10.1016/j.stemcr.2023.09.004. Epub 2023 Oct 5.
Stem Cell Reports. 2023.
PMID: 37802073
Free PMC article.
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Genome-wide chromosomal association of Upf1 is linked to Pol II transcription in Schizosaccharomyces pombe.
De S, Edwards DM, Dwivedi V, Wang J, Varsally W, Dixon HL, Singh AK, Owuamalam PO, Wright MT, Summers RP, Hossain MN, Price EM, Wojewodzic MW, Falciani F, Hodges NJ, Saponaro M, Tanaka K, Azzalin CM, Baumann P, Hebenstreit D, Brogna S.
De S, et al. Among authors: varsally w.
Nucleic Acids Res. 2022 Jan 11;50(1):350-367. doi: 10.1093/nar/gkab1249.
Nucleic Acids Res. 2022.
PMID: 34928380
Free PMC article.
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UPF1 involvement in nuclear functions.
Varsally W, Brogna S.
Varsally W, et al.
Biochem Soc Trans. 2012 Aug;40(4):778-83. doi: 10.1042/BST20120052.
Biochem Soc Trans. 2012.
PMID: 22817733
Review.
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Ribosomal proteins' association with transcription sites peaks at tRNA genes in Schizosaccharomyces pombe.
De S, Varsally W, Falciani F, Brogna S.
De S, et al. Among authors: varsally w.
RNA. 2011 Sep;17(9):1713-26. doi: 10.1261/rna.2808411. Epub 2011 Jul 14.
RNA. 2011.
PMID: 21757508
Free PMC article.
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