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Bipartite Community Structure of eQTLs.
Platig J, Castaldi PJ, DeMeo D, Quackenbush J. Platig J, et al. PLoS Comput Biol. 2016 Sep 12;12(9):e1005033. doi: 10.1371/journal.pcbi.1005033. eCollection 2016 Sep. PLoS Comput Biol. 2016. PMID: 27618581 Free PMC article.
Alternative poly-adenylation modulates α1-antitrypsin expression in chronic obstructive pulmonary disease.
Lackey L, Coria A, Ghosh AJ, Grayeski P, Hatfield A, Shankar V, Platig J, Xu Z, Ramos SBV, Silverman EK, Ortega VE, Cho MH, Hersh CP, Hobbs BD, Castaldi P, Laederach A. Lackey L, et al. Among authors: platig j. PLoS Genet. 2021 Nov 16;17(11):e1009912. doi: 10.1371/journal.pgen.1009912. eCollection 2021 Nov. PLoS Genet. 2021. PMID: 34784346 Free PMC article.
Exploring regulation in tissues with eQTL networks.
Fagny M, Paulson JN, Kuijjer ML, Sonawane AR, Chen CY, Lopes-Ramos CM, Glass K, Quackenbush J, Platig J. Fagny M, et al. Among authors: platig j. Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):E7841-E7850. doi: 10.1073/pnas.1707375114. Epub 2017 Aug 29. Proc Natl Acad Sci U S A. 2017. PMID: 28851834 Free PMC article.
Predicting genotype-specific gene regulatory networks.
Weighill D, Ben Guebila M, Glass K, Quackenbush J, Platig J. Weighill D, et al. Among authors: platig j. Genome Res. 2022 Mar;32(3):524-533. doi: 10.1101/gr.275107.120. Epub 2022 Feb 22. Genome Res. 2022. PMID: 35193937 Free PMC article.
Regulatory network changes between cell lines and their tissues of origin.
Lopes-Ramos CM, Paulson JN, Chen CY, Kuijjer ML, Fagny M, Platig J, Sonawane AR, DeMeo DL, Quackenbush J, Glass K. Lopes-Ramos CM, et al. Among authors: platig j. BMC Genomics. 2017 Sep 12;18(1):723. doi: 10.1186/s12864-017-4111-x. BMC Genomics. 2017. PMID: 28899340 Free PMC article.
GRAND: a database of gene regulatory network models across human conditions.
Ben Guebila M, Lopes-Ramos CM, Weighill D, Sonawane AR, Burkholz R, Shamsaei B, Platig J, Glass K, Kuijjer ML, Quackenbush J. Ben Guebila M, et al. Among authors: platig j. Nucleic Acids Res. 2022 Jan 7;50(D1):D610-D621. doi: 10.1093/nar/gkab778. Nucleic Acids Res. 2022. PMID: 34508353 Free PMC article.
28 results