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Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation.
Elife. 2019 Jul 29;8:e47891. doi: 10.7554/eLife.47891.
Elife. 2019.
PMID: 31356150
Free PMC article.
MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data.
Shahryary Y, Hazarika RR, Johannes F.
Shahryary Y, et al.
BMC Genomics. 2020 Jul 13;21(1):479. doi: 10.1186/s12864-020-06886-3.
BMC Genomics. 2020.
PMID: 32660416
Free PMC article.
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AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants.
Shahryary Y, Symeonidi A, Hazarika RR, Denkena J, Mubeen T, Hofmeister B, van Gurp T, Colomé-Tatché M, Verhoeven KJF, Tuskan G, Schmitz RJ, Johannes F.
Shahryary Y, et al.
Genome Biol. 2020 Oct 6;21(1):260. doi: 10.1186/s13059-020-02161-6.
Genome Biol. 2020.
PMID: 33023650
Free PMC article.
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A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa.
Hofmeister BT, Denkena J, Colomé-Tatché M, Shahryary Y, Hazarika R, Grimwood J, Mamidi S, Jenkins J, Grabowski PP, Sreedasyam A, Shu S, Barry K, Lail K, Adam C, Lipzen A, Sorek R, Kudrna D, Talag J, Wing R, Hall DW, Jacobsen D, Tuskan GA, Schmutz J, Johannes F, Schmitz RJ.
Hofmeister BT, et al. Among authors: shahryary y.
Genome Biol. 2020 Oct 6;21(1):259. doi: 10.1186/s13059-020-02162-5.
Genome Biol. 2020.
PMID: 33023654
Free PMC article.
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