Barsnes H - Search Results

1

PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping.

Sánchez LFH, Burger B, Horro C, Fabregat A, Johansson S, Njølstad PR, Barsnes H, Hermjakob H, Vaudel M. Sánchez LFH, et al. Among authors: barsnes h. Gigascience. 2019 Aug 1;8(8):giz088. doi: 10.1093/gigascience/giz088. Gigascience. 2019. PMID: 31363752 Free PMC article.

2

The Proteomics Identifications database: 2010 update.

Vizcaíno JA, Côté R, Reisinger F, Barsnes H, Foster JM, Rameseder J, Hermjakob H, Martens L. Vizcaíno JA, et al. Among authors: barsnes h. Nucleic Acids Res. 2010 Jan;38(Database issue):D736-42. doi: 10.1093/nar/gkp964. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906717 Free PMC article.

3

XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.

Muth T, Vaudel M, Barsnes H, Martens L, Sickmann A. Muth T, et al. Among authors: barsnes h. Proteomics. 2010 Apr;10(7):1522-4. doi: 10.1002/pmic.200900759. Proteomics. 2010. PMID: 20140905

4

The Ontology Lookup Service: bigger and better.

Côté R, Reisinger F, Martens L, Barsnes H, Vizcaino JA, Hermjakob H. Côté R, et al. Among authors: barsnes h. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W155-60. doi: 10.1093/nar/gkq331. Epub 2010 May 11. Nucleic Acids Res. 2010. PMID: 20460452 Free PMC article.

5

compomics-utilities: an open-source Java library for computational proteomics.

Barsnes H, Vaudel M, Colaert N, Helsens K, Sickmann A, Berven FS, Martens L. Barsnes H, et al. BMC Bioinformatics. 2011 Mar 8;12:70. doi: 10.1186/1471-2105-12-70. BMC Bioinformatics. 2011. PMID: 21385435 Free PMC article.

6

Thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files.

Colaert N, Barsnes H, Vaudel M, Helsens K, Timmerman E, Sickmann A, Gevaert K, Martens L. Colaert N, et al. Among authors: barsnes h. J Proteome Res. 2011 Aug 5;10(8):3840-3. doi: 10.1021/pr2005154. Epub 2011 Jul 11. J Proteome Res. 2011. PMID: 21714566

7

The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium.

Côté RG, Griss J, Dianes JA, Wang R, Wright JC, van den Toorn HW, van Breukelen B, Heck AJ, Hulstaert N, Martens L, Reisinger F, Csordas A, Ovelleiro D, Perez-Rivevol Y, Barsnes H, Hermjakob H, Vizcaíno JA. Côté RG, et al. Among authors: barsnes h. Mol Cell Proteomics. 2012 Dec;11(12):1682-9. doi: 10.1074/mcp.O112.021543. Epub 2012 Sep 4. Mol Cell Proteomics. 2012. PMID: 22949509 Free PMC article.

8

Shedding light on black boxes in protein identification.

Vaudel M, Venne AS, Berven FS, Zahedi RP, Martens L, Barsnes H. Vaudel M, et al. Among authors: barsnes h. Proteomics. 2014 May;14(9):1001-5. doi: 10.1002/pmic.201300488. Epub 2014 Mar 20. Proteomics. 2014. PMID: 24678044

9

Bioinformatics for proteomics: opportunities at the interface between the scientists, their experiments, and the community.

Vaudel M, Barsnes H, Martens L, Berven FS. Vaudel M, et al. Among authors: barsnes h. Methods Mol Biol. 2014;1156:239-48. doi: 10.1007/978-1-4939-0685-7_16. Methods Mol Biol. 2014. PMID: 24791993

10

Carboxyl-ester lipase maturity-onset diabetes of the young disease protein biomarkers in secretin-stimulated duodenal juice.

Bjorlykke Y, Vethe H, Vaudel M, Barsnes H, Berven FS, Tjora E, Raeder H. Bjorlykke Y, et al. Among authors: barsnes h. J Proteome Res. 2015 Jan 2;14(1):521-30. doi: 10.1021/pr500750z. Epub 2014 Nov 4. J Proteome Res. 2015. PMID: 25369532

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