de Souza SJ - Search Results

1

Essential Saccharomyces cerevisiae genome instability suppressing genes identify potential human tumor suppressors.

Srivatsan A, Li B, Sanchez DN, Somach SB, da Silva VL, de Souza SJ, Putnam CD, Kolodner RD. Srivatsan A, et al. Among authors: de souza sj. Proc Natl Acad Sci U S A. 2019 Aug 27;116(35):17377-17382. doi: 10.1073/pnas.1906921116. Epub 2019 Aug 13. Proc Natl Acad Sci U S A. 2019. PMID: 31409704 Free PMC article.

2

A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers.

Putnam CD, Srivatsan A, Nene RV, Martinez SL, Clotfelter SP, Bell SN, Somach SB, de Souza JE, Fonseca AF, de Souza SJ, Kolodner RD. Putnam CD, et al. Among authors: de souza sj, de souza je. Nat Commun. 2016 Apr 13;7:11256. doi: 10.1038/ncomms11256. Nat Commun. 2016. PMID: 27071721 Free PMC article.

3

S-score: a scoring system for the identification and prioritization of predicted cancer genes.

de Souza JE, Fonseca AF, Valieris R, Carraro DM, Wang JY, Kolodner RD, de Souza SJ. de Souza JE, et al. Among authors: de souza sj. PLoS One. 2014 Apr 7;9(4):e94147. doi: 10.1371/journal.pone.0094147. eCollection 2014. PLoS One. 2014. PMID: 24710071 Free PMC article.

4

A tool for integrating genetic and mass spectrometry-based peptide data: Proteogenomics Viewer: PV: A genome browser-like tool, which includes MS data visualization and peptide identification parameters.

Kroll JE, da Silva VL, de Souza SJ, de Souza GA. Kroll JE, et al. Among authors: de souza sj, de souza ga. Bioessays. 2017 Jul;39(7). doi: 10.1002/bies.201700015. Epub 2017 Jun 5. Bioessays. 2017. PMID: 28582591 Review.

5

Genome-wide identification of cancer/testis genes and their association with prognosis in a pan-cancer analysis.

da Silva VL, Fonseca AF, Fonseca M, da Silva TE, Coelho AC, Kroll JE, de Souza JES, Stransky B, de Souza GA, de Souza SJ. da Silva VL, et al. Among authors: de souza jes, de souza sj, de souza ga. Oncotarget. 2017 Oct 10;8(54):92966-92977. doi: 10.18632/oncotarget.21715. eCollection 2017 Nov 3. Oncotarget. 2017. PMID: 29190970 Free PMC article.

6

Gain of transcription factor binding sites is associated to changes in the expression signature of human brain and testis and is correlated to genes with higher expression breadth.

da Silva VL, Dos Santos AMR, Blanco W, de Souza SJ. da Silva VL, et al. Among authors: de souza sj. Sci China Life Sci. 2019 Apr;62(4):526-534. doi: 10.1007/s11427-018-9454-7. Epub 2019 Mar 22. Sci China Life Sci. 2019. PMID: 30919278

7

A comprehensive analysis of core polyadenylation sequences and regulation by microRNAs in a set of cancer predisposition genes.

Vieira IA, Recamonde-Mendoza M, da Silva VL, Leão DP, Scheid MR, de Souza SJ, Ashton-Prolla P. Vieira IA, et al. Among authors: de souza sj. Gene. 2019 Sep 5;712:143943. doi: 10.1016/j.gene.2019.143943. Epub 2019 Jun 21. Gene. 2019. PMID: 31229581 Free article.

8

Populational landscape of INDELs affecting transcription factor-binding sites in humans.

Ribeiro-dos-Santos AM, da Silva VL, de Souza JE, de Souza SJ. Ribeiro-dos-Santos AM, et al. Among authors: de souza sj, de souza je. BMC Genomics. 2015 Jul 22;16(1):536. doi: 10.1186/s12864-015-1744-5. BMC Genomics. 2015. PMID: 26194008 Free PMC article.

9

Bioinformatics Analysis of the Human Surfaceome Reveals New Targets for a Variety of Tumor Types.

Fonseca AL, da Silva VL, da Fonsêca MM, Meira IT, da Silva TE, Kroll JE, Ribeiro-Dos-Santos AM, Freitas CR, Furtado R, de Souza JE, Stransky B, de Souza SJ. Fonseca AL, et al. Among authors: de souza sj, de souza je. Int J Genomics. 2016;2016:8346198. doi: 10.1155/2016/8346198. Epub 2016 Nov 14. Int J Genomics. 2016. PMID: 28097125 Free PMC article.

10

Chemical Inhibition of Apurinic-Apyrimidinic Endonuclease 1 Redox and DNA Repair Functions Affects the Inflammatory Response via Different but Overlapping Mechanisms.

Oliveira TT, Fontes-Dantas FL, de Medeiros Oliveira RK, Pinheiro DML, Coutinho LG, da Silva VL, de Souza SJ, Agnez-Lima LF. Oliveira TT, et al. Among authors: de souza sj. Front Cell Dev Biol. 2021 Sep 20;9:731588. doi: 10.3389/fcell.2021.731588. eCollection 2021. Front Cell Dev Biol. 2021. PMID: 34616737 Free PMC article.

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