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Comparison of Methods for Differential Co-expression Analysis for Disease Biomarker Prediction.
Comput Biol Med. 2019 Oct;113:103380. doi: 10.1016/j.compbiomed.2019.103380. Epub 2019 Aug 10.
Comput Biol Med. 2019.
PMID: 31415946
Review.
THD-Module Extractor: An Application for CEN Module Extraction and Interesting Gene Identification for Alzheimer's Disease.
Kakati T, Kashyap H, Bhattacharyya DK.
Kakati T, et al.
Sci Rep. 2016 Nov 30;6:38046. doi: 10.1038/srep38046.
Sci Rep. 2016.
PMID: 27901073
Free PMC article.
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X-Module: A novel fusion measure to associate co-expressed gene modules from condition-specific expression profiles.
Kakati T, Bhattacharyya DK, Kalita JK.
Kakati T, et al.
J Biosci. 2020;45:33.
J Biosci. 2020.
PMID: 32098912
Free article.
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THD-Tricluster: A robust triclustering technique and its application in condition specific change analysis in HIV-1 progression data.
Kakati T, Ahmed HA, Bhattacharyya DK, Kalita JK.
Kakati T, et al.
Comput Biol Chem. 2018 Aug;75:154-167. doi: 10.1016/j.compbiolchem.2018.05.007. Epub 2018 May 7.
Comput Biol Chem. 2018.
PMID: 29787933
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DEGnext: classification of differentially expressed genes from RNA-seq data using a convolutional neural network with transfer learning.
Kakati T, Bhattacharyya DK, Kalita JK, Norden-Krichmar TM.
Kakati T, et al.
BMC Bioinformatics. 2022 Jan 6;23(1):17. doi: 10.1186/s12859-021-04527-4.
BMC Bioinformatics. 2022.
PMID: 34991439
Free PMC article.
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