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GlyGen: Computational and Informatics Resources for Glycoscience.
York WS, Mazumder R, Ranzinger R, Edwards N, Kahsay R, Aoki-Kinoshita KF, Campbell MP, Cummings RD, Feizi T, Martin M, Natale DA, Packer NH, Woods RJ, Agarwal G, Arpinar S, Bhat S, Blake J, Castro LJG, Fochtman B, Gildersleeve J, Goldman R, Holmes X, Jain V, Kulkarni S, Mahadik R, Mehta A, Mousavi R, Nakarakommula S, Navelkar R, Pattabiraman N, Pierce MJ, Ross K, Vasudev P, Vora J, Williamson T, Zhang W. York WS, et al. Among authors: mazumder r. Glycobiology. 2020 Jan 28;30(2):72-73. doi: 10.1093/glycob/cwz080. Glycobiology. 2020. PMID: 31616925 Free PMC article. No abstract available.
GlyGen data model and processing workflow.
Kahsay R, Vora J, Navelkar R, Mousavi R, Fochtman BC, Holmes X, Pattabiraman N, Ranzinger R, Mahadik R, Williamson T, Kulkarni S, Agarwal G, Martin M, Vasudev P, Garcia L, Edwards N, Zhang W, Natale DA, Ross K, Aoki-Kinoshita KF, Campbell MP, York WS, Mazumder R. Kahsay R, et al. Among authors: mazumder r. Bioinformatics. 2020 Jun 1;36(12):3941-3943. doi: 10.1093/bioinformatics/btaa238. Bioinformatics. 2020. PMID: 32324859 Free PMC article.
Enhancing the interoperability of glycan data flow between ChEBI, PubChem and GlyGen.
Navelkar R, Owen G, Mutherkrishnan V, Thiessen P, Cheng T, Bolton E, Edwards N, Tiemeyer M, Campbell MP, Martin M, Vora J, Kahsay R, Mazumder R. Navelkar R, et al. Among authors: mazumder r. Glycobiology. 2021 Dec 18;31(11):1510-1519. doi: 10.1093/glycob/cwab078. Glycobiology. 2021. PMID: 34314492 Free PMC article.
Community annotation in biology.
Mazumder R, Natale DA, Julio JA, Yeh LS, Wu CH. Mazumder R, et al. Biol Direct. 2010 Feb 18;5:12. doi: 10.1186/1745-6150-5-12. Biol Direct. 2010. PMID: 20167071 Free PMC article.
Computational clustering for viral reference proteomes.
Chen C, Huang H, Mazumder R, Natale DA, McGarvey PB, Zhang J, Polson SW, Wang Y, Wu CH; UniProt Consortium. Chen C, et al. Among authors: mazumder r. Bioinformatics. 2016 Jul 1;32(13):2041-3. doi: 10.1093/bioinformatics/btw110. Epub 2016 Feb 26. Bioinformatics. 2016. PMID: 27153712 Free PMC article.
OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data.
Dingerdissen HM, Bastian F, Vijay-Shanker K, Robinson-Rechavi M, Bell A, Gogate N, Gupta S, Holmes E, Kahsay R, Keeney J, Kincaid H, King CH, Liu D, Crichton DJ, Mazumder R. Dingerdissen HM, et al. Among authors: mazumder r. JCO Clin Cancer Inform. 2020 Mar;4:210-220. doi: 10.1200/CCI.19.00117. JCO Clin Cancer Inform. 2020. PMID: 32142370 Free PMC article.
289 results